* installing *source* package 'splikit' ...
** this is package 'splikit' version '2.3.1'
** package 'splikit' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 14.3.0'
make[1]: Entering directory '/d/temp/2026_05_16_01_50_00_24726/RtmpYTOOaB/R.INSTALLfc7982ef553da/splikit/src'
g++ -std=gnu++20  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -DARMA_64BIT_WORD=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -DARMA_64BIT_WORD=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c average_silhouette.cpp -o average_silhouette.o
g++ -std=gnu++20  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -DARMA_64BIT_WORD=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c calcDeviances.cpp -o calcDeviances.o
g++ -std=gnu++20  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -DARMA_64BIT_WORD=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c cpp_pseudoR2.cpp -o cpp_pseudoR2.o
g++ -std=gnu++20  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -DARMA_64BIT_WORD=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c deviance_gene.cpp -o deviance_gene.o
g++ -std=gnu++20  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -DARMA_64BIT_WORD=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c hvf_gene_expression.cpp -o hvf_gene_expression.o
hvf_gene_expression.cpp: In function 'Rcpp::NumericVector standardizeSparse_variance_vst(SEXP, bool)':
hvf_gene_expression.cpp:61:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
   61 |   for (int r = 0; r < nrow; ++r)
      |   ^~~
hvf_gene_expression.cpp:64:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
   64 |     NumericVector expectedVar(nrow, 0.0), sd(nrow, 1.0);
      |     ^~~~~~~~~~~~~
g++ -std=gnu++20  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -DARMA_64BIT_WORD=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c make_m2_cpp.cpp -o make_m2_cpp.o
g++ -std=gnu++20  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp -DARMA_64BIT_WORD=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c row_variance.cpp -o row_variance.o
g++ -std=gnu++20 -shared -s -static-libgcc -o splikit.dll tmp.def RcppExports.o average_silhouette.o calcDeviances.o cpp_pseudoR2.o deviance_gene.o hvf_gene_expression.o make_m2_cpp.o row_variance.o -fopenmp -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2026_05_16_01_50_00_24726/RtmpYTOOaB/R.INSTALLfc7982ef553da/splikit/src'
make[1]: Entering directory '/d/temp/2026_05_16_01_50_00_24726/RtmpYTOOaB/R.INSTALLfc7982ef553da/splikit/src'
make[1]: Leaving directory '/d/temp/2026_05_16_01_50_00_24726/RtmpYTOOaB/R.INSTALLfc7982ef553da/splikit/src'
installing to d:/Rcompile/CRANpkg/lib/4.7/00LOCK-splikit/00new/splikit/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'splikit' as splikit_2.3.1.zip
* DONE (splikit)