• using R Under development (unstable) (2025-09-03 r88788 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.2.0     GNU Fortran (GCC) 14.2.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'simpr/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'simpr' version '0.2.6'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'simpr' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s] OK
• checking whether the package can be unloaded cleanly ... [1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s] OK
• checking loading without being on the library search path ... [1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [6s] OK
• checking Rd files ... [1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [12s] ERROR Running examples in 'simpr-Ex.R' failed The error most likely occurred in: > ### Name: fit.simpr_tibble > ### Title: Fit models to the simulated data > ### Aliases: fit.simpr_tibble fit.simpr_spec > > ### ** Examples > > ## Generate data to fit models > simple_linear_data = specify(a = ~ 2 + rnorm(n), + b = ~ 5 + 3*a + rnorm(n, 0, sd = 0.5)) %>% + define(n = 100:101) %>% + generate(2) > > ## Fit with a single linear term > linear_fit = simple_linear_data %>% + fit(linear = ~lm(b ~ a, data = .)) > > linear_fit # first fit element also prints full tibble -------------------------- # A tibble: 4 × 5   .sim_id n rep sim linear     <int> <int> <int> <list> <list> 1 1 100 1 <tibble [100 × 2]> <lm> 2 2 101 1 <tibble [101 × 2]> <lm> 3 3 100 2 <tibble [100 × 2]> <lm> 4 4 101 2 <tibble [101 × 2]> <lm> sim[[1]] -------------------------- # A tibble: 100 × 2        a b    <dbl> <dbl>  1 1.82 10.5  2 3.06 14.7  3 4.65 19.4  4 2.30 11.5  5 3.47 15.5  6 1.74 9.84  7 1.51 9.77  8 0.750 7.28  9 2.47 12.4 10 2.29 11.8 # ℹ 90 more rows linear[[1]] -------------------------- Call: lm(formula = b ~ a, data = .) Coefficients: (Intercept) a       5.044 2.986 > > ## Each element of $linear is a model object > linear_fit$linear [[1]] Call: lm(formula = b ~ a, data = .) Coefficients: (Intercept) a       5.044 2.986 [[2]] Call: lm(formula = b ~ a, data = .) Coefficients: (Intercept) a       5.038 2.980 [[3]] Call: lm(formula = b ~ a, data = .) Coefficients: (Intercept) a       4.945 3.064 [[4]] Call: lm(formula = b ~ a, data = .) Coefficients: (Intercept) a       4.929 3.035 > > ## We can fit multiple models to the same data > multi_fit = simple_linear_data %>% + fit(linear = ~lm(b ~ a, data = .), + quadratic = ~lm(b ~ a + I(a^2), data = .)) > > ## Two columns, one for each model > multi_fit full tibble -------------------------- # A tibble: 4 × 6   .sim_id n rep sim linear quadratic     <int> <int> <int> <list> <list> <list> 1 1 100 1 <tibble [100 × 2]> <lm> <lm> 2 2 101 1 <tibble [101 × 2]> <lm> <lm> 3 3 100 2 <tibble [100 × 2]> <lm> <lm> 4 4 101 2 <tibble [101 × 2]> <lm> <lm> sim[[1]] -------------------------- # A tibble: 100 × 2        a b    <dbl> <dbl>  1 1.82 10.5  2 3.06 14.7  3 4.65 19.4  4 2.30 11.5  5 3.47 15.5  6 1.74 9.84  7 1.51 9.77  8 0.750 7.28  9 2.47 12.4 10 2.29 11.8 # ℹ 90 more rows linear[[1]] -------------------------- Call: lm(formula = b ~ a, data = .) Coefficients: (Intercept) a       5.044 2.986 quadratic[[1]] -------------------------- Call: lm(formula = b ~ a + I(a^2), data = .) Coefficients: (Intercept) a I(a^2)    5.055689 2.972430 0.003048 > > ## Again, each element is a model object > multi_fit$quadratic [[1]] Call: lm(formula = b ~ a + I(a^2), data = .) Coefficients: (Intercept) a I(a^2)    5.055689 2.972430 0.003048 [[2]] Call: lm(formula = b ~ a + I(a^2), data = .) Coefficients: (Intercept) a I(a^2)     4.95366 3.10635 -0.03204 [[3]] Call: lm(formula = b ~ a + I(a^2), data = .) Coefficients: (Intercept) a I(a^2)    4.924078 3.096395 -0.008465 [[4]] Call: lm(formula = b ~ a + I(a^2), data = .) Coefficients: (Intercept) a I(a^2)    4.898686 3.071379 -0.008416 > > ## Can view terms more nicely with tidy_fits > multi_fit %>% + tidy_fits # A tibble: 20 × 9    .sim_id n rep Source term estimate std.error statistic p.value      <int> <int> <int> <chr> <chr> <dbl> <dbl> <dbl> <dbl>  1 1 100 1 linear (Interce… 5.04 0.119 42.3 1.02e-64  2 1 100 1 linear a 2.99 0.0510 58.6 4.53e-78  3 1 100 1 quadratic (Interce… 5.06 0.207 24.4 3.90e-43  4 1 100 1 quadratic a 2.97 0.198 15.0 4.14e-27  5 1 100 1 quadratic I(a^2) 0.00305 0.0428 0.0713 9.43e- 1  6 2 101 1 linear (Interce… 5.04 0.112 44.9 1.19e-67  7 2 101 1 linear a 2.98 0.0492 60.5 5.13e-80  8 2 101 1 quadratic (Interce… 4.95 0.142 34.8 5.87e-57  9 2 101 1 quadratic a 3.11 0.140 22.1 6.20e-40 10 2 101 1 quadratic I(a^2) -0.0320 0.0333 -0.962 3.38e- 1 11 3 100 2 linear (Interce… 4.94 0.0959 51.6 7.94e-73 12 3 100 2 linear a 3.06 0.0425 72.2 9.14e-87 13 3 100 2 quadratic (Interce… 4.92 0.132 37.4 1.99e-59 14 3 100 2 quadratic a 3.10 0.147 21.1 5.49e-38 15 3 100 2 quadratic I(a^2) -0.00846 0.0368 -0.230 8.18e- 1 16 4 101 2 linear (Interce… 4.93 0.114 43.3 3.59e-66 17 4 101 2 linear a 3.03 0.0513 59.2 4.24e-79 18 4 101 2 quadratic (Interce… 4.90 0.177 27.7 3.80e-48 19 4 101 2 quadratic a 3.07 0.169 18.2 3.50e-33 20 4 101 2 quadratic I(a^2) -0.00842 0.0370 -0.228 8.20e- 1 > > ## Can view model summaries with glance_fits > multi_fit %>% + glance_fits Error in `map()`: ℹ In index: 1. ℹ With name: linear. Caused by error: ℹ In index: 1. ℹ With name: 1. Caused by error in `ll()`: ! could not find function "ll" Backtrace:      ▆   1. ├─multi_fit %>% glance_fits   2. ├─simpr::glance_fits(.)   3. │ ├─simpr::apply_fits(...)   4. │ └─simpr:::apply_fits.simpr_tibble(...)   5. │ └─purrr::map_dfr(...)   6. │ └─purrr::map(.x, .f, ...)   7. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)   8. │ ├─purrr:::with_indexed_errors(...)   9. │ │ └─base::withCallingHandlers(...)  10. │ ├─purrr:::call_with_cleanup(...)  11. │ └─simpr (local) .f(.x[[i]], ...)  12. │ └─furrr::future_map_dfr(...)  13. │ └─furrr::future_map(...)  14. │ └─furrr:::furrr_map_template(...)  15. │ └─furrr:::furrr_template(...)  16. │ └─future::future(...)  17. │ ├─future::run(future)  18. │ └─future:::run.Future(future)  19. │ ├─base::tryCatch(...)  20. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)  21. │ │ ├─base (local) tryCatchOne(...)  22. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)  23. │ │ └─base (local) tryCatchList(expr, names[-nh], parentenv, handlers[-nh])  24. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])  25. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)  26. │ ├─future::launchFuture(backend, future = future)  27. │ └─future:::launchFuture.SequentialFutureBackend(backend, future = future)  28. │ └─future:::evalFuture(data)  29. │ ├─base::tryCatch(...)  30. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)  31. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])  32. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)  33. │ └─future:::evalFutureInternal(data)  34. │ ├─base::tryCatch(...)  35. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)  36. │ │ ├─base (local) tryCatchOne(...)  37. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)  38. │ │ └─base (local) tryCatchList(expr, names[-nh], parentenv, handlers[-nh])  39. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])  40. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)  41. │ ├─base::tryCatch(...)  42. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)  43. │ ├─base::withCallingHandlers(...)  44. │ ├─base::withVisible(...)  45. │ └─base::eval(expr, envir = globalenv())  46. │ └─base::eval(expr, envir = globalenv())  47. ├─base::local(...)  48. │ └─base::eval.parent(substitute(eval(quote(expr), envir)))  49. │ └─base::eval(expr, p)  50. │ └─base::eval(expr, p)  51. ├─base::eval(...)  52. │ └─base::eval(...)  53. │ ├─base::do.call(...furrr_map_fn, args)  54. │ └─purrr (local) `<fn>`(.x = `<named list>`, .f = `<fn>`)  55. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)  56. │ ├─purrr:::with_indexed_errors(...)  57. │ │ └─base::withCallingHandlers(...)  58. │ ├─purrr:::call_with_cleanup(...)  59. │ └─.f(.x[[i]], ...)  60. │ └─simpr (local) ...furrr_fn(...)  61. │ ├─tibble::as_tibble((purrr::as_mapper(.f))(...))  62. │ ├─(purrr::as_mapper(.f))(...)  63. │ └─broom:::glance.lm(...)  64. │ ├─base::with(...)  65. │ └─base::with.default(...)  66. │ └─base::eval(substitute(expr), data, enclos = parent.frame())  67. │ └─base::eval(substitute(expr), data, enclos = parent.frame())  68. │ └─tibble::tibble(...)  69. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)  70. │ └─rlang::eval_tidy(xs[[j]], mask)  71. ├─stats::AIC(x)  72. ├─stats:::AIC.default(x)  73. └─base::.handleSimpleError(...)  74. └─purrr (local) h(simpleError(msg, call))  75. └─cli::cli_abort(...)  76. └─rlang::abort(...) Execution halted
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [41s] ERROR   Running 'testthat.R' [41s] Running the tests in 'tests/testthat.R' failed. Complete output:   > library(testthat)   > library(simpr)      Attaching package: 'simpr'      The following object is masked from 'package:stats':          filter      The following objects are masked from 'package:base':          intersect, setdiff, setequal, union      >   > test_check("simpr")   [ FAIL 2 | WARN 1 | SKIP 0 | PASS 48 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_calc_glance.R:7:3'): glance_fits correctly returns broom::glance output ──   <purrr_error_indexed/rlang_error/error/condition>   Error in `(function (.x, .f, ..., .progress = FALSE)   {       map_("list", .x, .f, ..., .progress = .progress)   })(.x = 1, .f = function (...)   {       {           ...furrr_chunk_seeds_i <- ...furrr_chunk_seeds_env[["i"]]           ...furrr_chunk_seeds_env[["i"]] <- ...furrr_chunk_seeds_i +               1L           assign(x = ".Random.seed", value = ...furrr_chunk_seeds[[...furrr_chunk_seeds_i]],               envir = globalenv(), inherits = FALSE)       }       NULL       ...furrr_out <- ...furrr_fn(...)       ...furrr_out   })`: ℹ In index: 1.   Caused by error in `ll()`:   ! could not find function "ll"   Backtrace:        ▆     1. ├─... %>% relocate(.sim_id) at test_calc_glance.R:7:3     2. ├─dplyr::relocate(., .sim_id)     3. ├─dplyr::mutate(., .sim_id = 1)     4. ├─furrr::future_map(...)     5. │ └─furrr:::furrr_map_template(...)     6. │ └─furrr:::furrr_template(...)     7. │ └─future::future(...)     8. │ ├─future::run(future)     9. │ └─future:::run.Future(future)    10. │ ├─base::tryCatch(...)    11. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)    12. │ │ ├─base (local) tryCatchOne(...)    13. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)    14. │ │ └─base (local) tryCatchList(expr, names[-nh], parentenv, handlers[-nh])    15. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])    16. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)    17. │ ├─future::launchFuture(backend, future = future)    18. │ └─future:::launchFuture.SequentialFutureBackend(backend, future = future)    19. │ └─future:::evalFuture(data)    20. │ ├─base::tryCatch(...)    21. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)    22. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])    23. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)    24. │ └─future:::evalFutureInternal(data)    25. │ ├─base::tryCatch(...)    26. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)    27. │ │ ├─base (local) tryCatchOne(...)    28. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)    29. │ │ └─base (local) tryCatchList(expr, names[-nh], parentenv, handlers[-nh])    30. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])    31. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)    32. │ ├─base::tryCatch(...)    33. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)    34. │ ├─base::withCallingHandlers(...)    35. │ ├─base::withVisible(...)    36. │ └─base::eval(expr, envir = globalenv())    37. │ └─base::eval(expr, envir = globalenv())    38. ├─base::local(...)    39. │ └─base::eval.parent(substitute(eval(quote(expr), envir)))    40. │ └─base::eval(expr, p)    41. │ └─base::eval(expr, p)    42. ├─base::eval(...)    43. │ └─base::eval(...)    44. │ ├─base::do.call(...furrr_map_fn, args)    45. │ └─purrr (local) `<fn>`(.x = 1, .f = `<fn>`)    46. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)    47. │ ├─purrr:::with_indexed_errors(...)    48. │ │ └─base::withCallingHandlers(...)    49. │ ├─purrr:::call_with_cleanup(...)    50. │ └─.f(.x[[i]], ...)    51. │ └─simpr (local) ...furrr_fn(...)    52. │ ├─broom::glance(lm(x2 ~ x1)) at test_calc_glance.R:11:5    53. │ └─broom:::glance.lm(lm(x2 ~ x1))    54. │ ├─base::with(...)    55. │ └─base::with.default(...)    56. │ └─base::eval(substitute(expr), data, enclos = parent.frame())    57. │ └─base::eval(substitute(expr), data, enclos = parent.frame())    58. │ └─tibble::tibble(...)    59. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)    60. │ └─rlang::eval_tidy(xs[[j]], mask)    61. ├─stats::AIC(x)    62. ├─stats:::AIC.default(x)    63. └─base::.handleSimpleError(...)    64. └─purrr (local) h(simpleError(msg, call))    65. └─cli::cli_abort(...)    66. └─rlang::abort(...)   ── Error ('test_include.R:67:3'): delayed tidy() and glance() same as generate() ──   <purrr_error_indexed/rlang_error/error/condition>   Error in `map(.x, .f, ...)`: ℹ In index: 1.   ℹ With name: lm.   Caused by error:   ℹ In index: 1.   ℹ With name: 1.   Caused by error in `ll()`:   ! could not find function "ll"      [ FAIL 2 | WARN 1 | SKIP 0 | PASS 48 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [38s] ERROR Error(s) in re-building vignettes: --- re-building 'optimization.Rmd' using rmarkdown --- finished re-building 'optimization.Rmd' --- re-building 'reproducibility.Rmd' using rmarkdown --- finished re-building 'reproducibility.Rmd' --- re-building 'simpr.Rmd' using rmarkdown Quitting from simpr.Rmd:340-348 [glance_fits_simple] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'simpr.Rmd' failed with diagnostics: ℹ In index: 1. ℹ With name: lm. Caused by error: ℹ In index: 1. ℹ With name: 1. Caused by error in `ll()`: ! could not find function "ll" --- failed re-building 'simpr.Rmd' --- re-building 'simulation-errors.Rmd' using rmarkdown --- finished re-building 'simulation-errors.Rmd' SUMMARY: processing the following file failed:   'simpr.Rmd' Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [29s] OK
• checking HTML version of manual ... [4s] OK
• DONE

Status: 3 ERRORs