* installing *source* package 'seqtrie' ...
** this is package 'seqtrie' version '0.3.5'
** package 'seqtrie' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 14.2.0'
using C++17
make[1]: Entering directory '/d/temp/2025_10_23_01_50_00_20306/RtmpOQWiHn/R.INSTALLb804422a2344/seqtrie/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_PARALLEL_USE_TBB=1 -DSEQTRIE_SMALL_ARRAY_SIZE=32 -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.6/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CharCounter.cpp -o CharCounter.o
In file included from CharCounter.cpp:1:
seqtrie_types.h: In function 'CostMap convert_cost_matrix(Rcpp::IntegerMatrix, int, int)':
seqtrie_types.h:193:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
193 | for(size_t i = 0; i < rownames.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
seqtrie_types.h:204:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
204 | for(size_t i = 0; i < rownames.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_PARALLEL_USE_TBB=1 -DSEQTRIE_SMALL_ARRAY_SIZE=32 -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.6/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RadixForest.cpp -o RadixForest.o
In file included from RadixForest.cpp:1:
seqtrie_types.h: In function 'CostMap convert_cost_matrix(Rcpp::IntegerMatrix, int, int)':
seqtrie_types.h:193:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
193 | for(size_t i = 0; i < rownames.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
seqtrie_types.h:204:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
204 | for(size_t i = 0; i < rownames.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_PARALLEL_USE_TBB=1 -DSEQTRIE_SMALL_ARRAY_SIZE=32 -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.6/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RadixTree.cpp -o RadixTree.o
In file included from RadixTree.cpp:1:
seqtrie_types.h: In function 'CostMap convert_cost_matrix(Rcpp::IntegerMatrix, int, int)':
seqtrie_types.h:193:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
193 | for(size_t i = 0; i < rownames.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
seqtrie_types.h:204:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
204 | for(size_t i = 0; i < rownames.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_PARALLEL_USE_TBB=1 -DSEQTRIE_SMALL_ARRAY_SIZE=32 -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.6/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
seqtrie_types.h: In function 'CostMap convert_cost_matrix(Rcpp::IntegerMatrix, int, int)':
seqtrie_types.h:193:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
193 | for(size_t i = 0; i < rownames.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
seqtrie_types.h:204:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
204 | for(size_t i = 0; i < rownames.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_PARALLEL_USE_TBB=1 -DSEQTRIE_SMALL_ARRAY_SIZE=32 -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.6/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pairwise.cpp -o pairwise.o
In file included from pairwise.cpp:1:
seqtrie_types.h: In function 'CostMap convert_cost_matrix(Rcpp::IntegerMatrix, int, int)':
seqtrie_types.h:193:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
193 | for(size_t i = 0; i < rownames.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
seqtrie_types.h:204:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
204 | for(size_t i = 0; i < rownames.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
In file included from D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/mpl/arg.hpp:25,
from D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/mpl/placeholders.hpp:24,
from D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/mpl/apply.hpp:24,
from D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/serialization/array_optimization.hpp:18,
from D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/serialization/array_wrapper.hpp:21,
from D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/serialization/array.hpp:26,
from D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/numeric/ublas/storage.hpp:22,
from D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/numeric/ublas/vector.hpp:21,
from D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/numeric/ublas/matrix.hpp:18,
from ../inst/include/seqtrie/pairwise.h:24,
from pairwise.cpp:2:
D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/mpl/assert.hpp: At global scope:
D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
195 | assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
| -
195 | assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
| -
D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| -
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
| -
g++ -shared -s -static-libgcc -o seqtrie.dll tmp.def CharCounter.o RadixForest.o RadixTree.o RcppExports.o pairwise.o -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64 -ltbb -ltbbmalloc -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_10_23_01_50_00_20306/RtmpOQWiHn/R.INSTALLb804422a2344/seqtrie/src'
make[1]: Entering directory '/d/temp/2025_10_23_01_50_00_20306/RtmpOQWiHn/R.INSTALLb804422a2344/seqtrie/src'
make[1]: Leaving directory '/d/temp/2025_10_23_01_50_00_20306/RtmpOQWiHn/R.INSTALLb804422a2344/seqtrie/src'
installing to d:/Rcompile/CRANpkg/lib/4.6/00LOCK-seqtrie/00new/seqtrie/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'seqtrie' as seqtrie_0.3.5.zip
* DONE (seqtrie)