• using R Under development (unstable) (2026-09-21 r90579 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.3.0     GNU Fortran (GCC) 14.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8 * current time: 2026-09-24 23:34:18 UTC
• checking for file 'sbm/DESCRIPTION' ... OK
• this is package 'sbm' version '0.4.7'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'sbm' can be installed ... OK See the install log for details.
• used C++ compiler: 'g++.exe (GCC) 14.3.0'
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s] OK
• checking whether the package can be unloaded cleanly ... [3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [4s] OK
• checking whether the namespace can be unloaded cleanly ... [3s] OK
• checking loading without being on the library search path ... [3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [13s] OK
• checking Rd files ... [1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... [1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compiled code ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [28s] OK
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [20s] OK   Running 'spelling.R' [0s]   Running 'testthat.R' [19s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [79s] ERROR Error(s) in re-building vignettes: --- re-building 'Multipartite_EcologicalNetwork.Rmd' using rmarkdown --- finished re-building 'Multipartite_EcologicalNetwork.Rmd' --- re-building 'MultiplexNetwork_principle.Rmd' using rmarkdown --- finished re-building 'MultiplexNetwork_principle.Rmd' --- re-building 'Multiplex_allianceNwar_case_study.Rmd' using rmarkdown --- finished re-building 'Multiplex_allianceNwar_case_study.Rmd' --- re-building 'SBM_fungus_tree_network.Rmd' using rmarkdown Quitting from SBM_fungus_tree_network.Rmd:285-289 [plot bipartite meso] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `asMethod()`: ! lazy-load database 'D:/temp/2026_09_24_01_50_00_23554/Rtmpy6qIJG/RLIBS_1f38474d319a8/Matrix/R/Matrix.rdb' is corrupt --- Backtrace:      ▆   1. ├─base::plot(...)   2. └─sbm:::plot.SBM(...)   3. └─x$plot(type, ordered, plotOptions)   4. └─sbm:::plotMeso(...)   5. ├─base::suppressWarnings(...)   6. │ └─base::withCallingHandlers(...)   7. └─igraph::graph_from_incidence_matrix(alpha.norm, weighted = TRUE)   8. └─igraph::graph_from_biadjacency_matrix(...)   9. └─igraph:::graph_incidence_build(...)  10. └─methods::as(incidence, "dgCMatrix")  11. └─Matrix (local) asMethod(object) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'SBM_fungus_tree_network.Rmd' failed with diagnostics: lazy-load database 'D:/temp/2026_09_24_01_50_00_23554/Rtmpy6qIJG/RLIBS_1f38474d319a8/Matrix/R/Matrix.rdb' is corrupt --- failed re-building 'SBM_fungus_tree_network.Rmd' SUMMARY: processing the following file failed:   'SBM_fungus_tree_network.Rmd' Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [21s] OK
• checking HTML version of manual ... [4s] OK
• DONE

Status: 1 ERROR