- using R Under development (unstable) (2023-01-31 r83741 ucrt)
- using platform: x86_64-w64-mingw32 (64-bit)
- R was compiled by
gcc.exe (GCC) 12.2.0
GNU Fortran (GCC) 12.2.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'rcdk/DESCRIPTION' ... OK
- this is package 'rcdk' version '3.7.0'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'rcdk' can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [7s] OK
- checking whether the package can be loaded with stated dependencies ... [1s] WARNING
Loading required package: rcdklibs
Loading required package: rJava
Loading required package: methods
OpenJDK 64-Bit Server VM warning: INFO: os::commit_memory(0x00000000e0000000, 536870912, 0) failed; error='Die Auslagerungsdatei ist zu klein, um diesen Vorgang durchzuführen' (DOS error/errno=1455)
#
# There is insufficient memory for the Java Runtime Environment to continue.
# Native memory allocation (mmap) failed to map 536870912 bytes for Failed to commit area from 0x00000000e0000000 to 0x0000000100000000 of length 536870912.
# An error report file with more information is saved as:
# d:\Rcompile\CRANpkg\local\4.3\rcdk\hs_err_pid100572.log
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package. All dependencies must be
declared in DESCRIPTION.
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
- checking whether the package can be unloaded cleanly ... [2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s] OK
- checking loading without being on the library search path ... [2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [9s] OK
- checking Rd files ... [3s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in Makefiles ... OK
- checking for GNU extensions in Makefiles ... OK
- checking include directives in Makefiles ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [5s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [15s] OK
Running 'doRUnit.R' [15s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in 'inst/doc' ... OK
- checking re-building of vignette outputs ... [9s] ERROR
Error(s) in re-building vignettes:
--- re-building 'molform.Rmd' using rmarkdown
--- finished re-building 'molform.Rmd'
--- re-building 'using-rcdk.Rmd' using rmarkdown
[0.014s][warning][gc] Failed to reserve memory for new overflow mark stack with 4096 chunks and size 33554432B.
Error occurred during initialization of VM
Failed to allocate initial concurrent mark overflow mark stack.
SUMMARY: processing the following file failed:
'using-rcdk.Rmd'
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [0s] WARNING
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
- checking PDF version of manual without index ... ERROR
Re-running with no redirection of stdout/stderr.
- checking HTML version of manual ... [15s] OK
- DONE
Status: 2 ERRORs, 2 WARNINGs