- using R Under development (unstable) (2025-09-03 r88788 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'rbiom/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'rbiom' version '2.2.1'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'rbiom' can be installed ... OK
See the install log for details.
- used C compiler: 'gcc.exe (GCC) 14.2.0'
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s] OK
- checking whether the package can be loaded with stated dependencies ... [3s] OK
- checking whether the package can be unloaded cleanly ... [3s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s] OK
- checking whether the namespace can be unloaded cleanly ... [4s] OK
- checking loading without being on the library search path ... [2s] OK
- checking whether startup messages can be suppressed ... [3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [22s] OK
- checking Rd files ... [2s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [4s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compiled code ... OK
- checking examples ... [10s] ERROR
Running examples in 'rbiom-Ex.R' failed
The error most likely occurred in:
> ### Name: adiv_corrplot
> ### Title: Visualize alpha diversity with scatterplots and trendlines.
> ### Aliases: adiv_corrplot
>
> ### ** Examples
>
> library(rbiom)
>
> p <- adiv_corrplot(babies, "age", stat.by = "deliv", fit = "gam")
>
> p
Error in `fun()`:
! Problem while computing aesthetics.
ℹ Error occurred in the 3rd layer.
Caused by error:
! object 'Age (days)' not found
Backtrace:
▆
1. ├─base (local) `<fn>`(x)
2. ├─ggplot2:::print.ggplot(x)
3. │ ├─ggplot2::ggplot_build(x)
4. │ └─ggplot2:::ggplot_build.ggplot(x)
5. │ └─ggplot2:::by_layer(...)
6. │ ├─rlang::try_fetch(...)
7. │ │ ├─base::tryCatch(...)
8. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
11. │ │ └─base::withCallingHandlers(...)
12. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
13. │ └─l$compute_aesthetics(d, plot)
14. │ └─ggplot2 (local) compute_aesthetics(..., self = self)
15. │ └─base::lapply(aesthetics, eval_tidy, data = data, env = env)
16. │ └─rlang (local) FUN(X[[i]], ...)
17. └─base::.handleSimpleError(...)
18. └─rlang (local) h(simpleError(msg, call))
19. └─handlers[[1L]](cnd)
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
Execution halted
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [22s] OK
Running 'testthat.r' [21s]
- checking PDF version of manual ... [27s] OK
- checking HTML version of manual ... [19s] OK
- DONE
Status: 1 ERROR