* installing *source* package 'penPHcure' ...
** package 'penPHcure' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 12.3.0'
using C++11
make[1]: Entering directory '/d/temp/RtmpEDYxBk/R.INSTALL14e44f1b5d9c/penPHcure/src'
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cox.base_hazard.cpp -o cox.base_hazard.o
cox.base_hazard.cpp: In function 'arma::vec cox_base_hazard_cpp(const arma::vec&, const arma::uword&, const arma::uword&, const arma::vec&, const arma::vec&, const arma::uvec&, const arma::uvec&, const arma::uvec&, const arma::mat&, const arma::vec&, const arma::uword&)':
cox.base_hazard.cpp:66:9: warning: 'dtime' may be used uninitialized [-Wmaybe-uninitialized]
   66 |         if (start[p1] < dtime) break;
      |         ^~
cox.base_hazard.cpp:39:10: note: 'dtime' was declared here
   39 |   double dtime,risk,denom2;
      |          ^~~~~
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cox.pen.fit.cpp -o cox.pen.fit.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cox.std.fit.cpp -o cox.std.fit.o
cox.std.fit.cpp: In function 'double logL_cox_cpp(const arma::vec&, const arma::uword&, const arma::uword&, const arma::vec&, const arma::vec&, const arma::uvec&, const arma::uvec&, const arma::uvec&, const arma::mat&, const arma::vec&, const arma::uword&)':
cox.std.fit.cpp:64:9: warning: 'dtime' may be used uninitialized [-Wmaybe-uninitialized]
   64 |         if (start[p1] < dtime) break;
      |         ^~
cox.std.fit.cpp:43:10: note: 'dtime' was declared here
   43 |   double dtime,risk,denom2;
      |          ^~~~~
cox.std.fit.cpp: In function 'void logLgradHess_cox_cpp(double&, arma::vec&, arma::mat&, const arma::vec&, const arma::uword&, const arma::uword&, const arma::vec&, const arma::vec&, const arma::uvec&, const arma::uvec&, const arma::uvec&, const arma::mat&, const arma::vec&, const arma::uword&)':
cox.std.fit.cpp:189:14: warning: 'dtime' may be used uninitialized [-Wmaybe-uninitialized]
  189 |         else if (start[p] < dtime) {
      |              ^~
cox.std.fit.cpp:126:10: note: 'dtime' was declared here
  126 |   double dtime,risk,denom2;
      |          ^~~~~
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cure.pen.fit.cpp -o cure.pen.fit.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cure.simulate.cpp -o cure.simulate.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cure.std.fit.cpp -o cure.std.fit.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c logit.pen.fit.cpp -o logit.pen.fit.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c logit.std.fit.cpp -o logit.std.fit.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c penPHcure.initialize.cpp -o penPHcure.initialize.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c penalties.cpp -o penalties.o
g++ -shared -s -static-libgcc -o penPHcure.dll tmp.def RcppExports.o cox.base_hazard.o cox.pen.fit.o cox.std.fit.o cure.pen.fit.o cure.simulate.o cure.std.fit.o logit.pen.fit.o logit.std.fit.o penPHcure.initialize.o penalties.o -fopenmp -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/RtmpEDYxBk/R.INSTALL14e44f1b5d9c/penPHcure/src'
make[1]: Entering directory '/d/temp/RtmpEDYxBk/R.INSTALL14e44f1b5d9c/penPHcure/src'
make[1]: Leaving directory '/d/temp/RtmpEDYxBk/R.INSTALL14e44f1b5d9c/penPHcure/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-penPHcure/00new/penPHcure/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'penPHcure' as penPHcure_1.0.2.zip
* DONE (penPHcure)