- using R Under development (unstable) (2026-02-18 r89435 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 14.3.0
GNU Fortran (GCC) 14.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
* current time: 2026-02-19 17:30:33 UTC
- checking for file 'pam/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'pam' version '2.0.0'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'pam' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s] OK
- checking whether the package can be unloaded cleanly ... [0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s] OK
- checking loading without being on the library search path ... [0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [4s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [8s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [50s] ERROR
Running 'testthat.R' [49s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(pam)
>
> test_check("pam")
v Created directory: 'results'.
eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced
eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced
eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced
eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced
platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced
eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced
eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced
eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced
platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
skipped file: 20231123_07.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate residual_sum_of_squares with eilers_peeters
platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
skipped file: 20231214_09.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate residual_sum_of_squares with eilers_peeters
skipped file: 20231214_10.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate residual_sum_of_squares with eilers_peeters
eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced
eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced
eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced
eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced
platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
skipped file: 20231214_13.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate residual_sum_of_squares with eilers_peeters
eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced
eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced
eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced
eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced
platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced
eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced
eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced
eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced
platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
skipped file: 20231214_12.csv because of error: Error in value[[3L]](cond): error while calculating vollenweider model: Error in nlsModel(formula, mf, start, wts): singular gradient matrix at initial parameter estimates
skipped file: 20231214_15.csv because of error: Error in value[[3L]](cond): error while calculating vollenweider model: Error in nlsModel(formula, mf, start, wts): singular gradient matrix at initial parameter estimates
Saving _problems/test-compare_regression_models_etr_II-21.R
Saving _problems/test-compare_regression_models_etr_II-22.R
eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced
eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced
eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced
eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced
platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced
eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced
eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced
eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced
platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
skipped file: 20231123_07.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate residual_sum_of_squares with eilers_peeters
platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
skipped file: 20231214_09.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate residual_sum_of_squares with eilers_peeters
skipped file: 20231214_10.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate residual_sum_of_squares with eilers_peeters
eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced
eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced
eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced
eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced
platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
skipped file: 20231214_13.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate residual_sum_of_squares with eilers_peeters
eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced
eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced
eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced
eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced
platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced
eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced
eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced
eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced
platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
skipped file: 20231214_12.csv because of error: Error in value[[3L]](cond): error while calculating vollenweider model: Error in nlsModel(formula, mf, start, wts): singular gradient matrix at initial parameter estimates
skipped file: 20231214_15.csv because of error: Error in value[[3L]](cond): error while calculating vollenweider model: Error in nlsModel(formula, mf, start, wts): singular gradient matrix at initial parameter estimates
Saving _problems/test-compare_regression_models_total-50.R
Saving _problems/test-compare_regression_models_total-51.R
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 1073 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compare_regression_models_etr_II.R:21:5'): compare_regression_models etr II ──
Expected `model_points_etr_II[["platt"]]` to equal 20.
Differences:
`actual`: 19.0
`expected`: 20.0
── Failure ('test-compare_regression_models_etr_II.R:22:5'): compare_regression_models etr II ──
Expected `model_points_etr_II[["vollenweider"]]` to equal 39.
Differences:
`actual`: 40.0
`expected`: 39.0
── Failure ('test-compare_regression_models_total.R:50:5'): compare_regression_models etr I + II ──
Expected `result[["platt_total"]]` to equal 39.
Differences:
`actual`: 38.0
`expected`: 39.0
── Failure ('test-compare_regression_models_total.R:51:5'): compare_regression_models etr I + II ──
Expected `result[["vollenweider_total"]]` to equal 72.
Differences:
`actual`: 73.0
`expected`: 72.0
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 1073 ]
Error:
! Test failures.
Execution halted
- checking PDF version of manual ... [21s] OK
- checking HTML version of manual ... [9s] OK
- DONE
Status: 1 ERROR