• using R Under development (unstable) (2025-09-03 r88788 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.2.0     GNU Fortran (GCC) 14.2.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'mice/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'mice' version '3.18.0'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'mice' can be installed ... OK See the install log for details.
• used C++ compiler: 'g++.exe (GCC) 14.2.0'
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s] OK
• checking whether the package can be loaded with stated dependencies ... [3s] OK
• checking whether the package can be unloaded cleanly ... [2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s] OK
• checking whether the namespace can be unloaded cleanly ... [3s] OK
• checking loading without being on the library search path ... [3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [18s] OK
• checking Rd files ... [4s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... [1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compiled code ... OK
• checking examples ... [5s] ERROR Running examples in 'mice-Ex.R' failed The error most likely occurred in: > ### Name: D3 > ### Title: Compare two nested models using D3-statistic > ### Aliases: D3 > > ### ** Examples > > # Compare two linear models: > imp <- mice(nhanes2, seed = 51009, print = FALSE) > mi1 <- with(data = imp, expr = lm(bmi ~ age + hyp + chl)) > mi0 <- with(data = imp, expr = lm(bmi ~ age + hyp)) > D3(mi1, mi0) Error in ll(object) : could not find function "ll" Calls: D3 ... tibble_quos -> eval_tidy -> <Anonymous> -> AIC.default Execution halted
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [68s] ERROR   Running 'testthat.R' [67s] Running the tests in 'tests/testthat.R' failed. Complete output:   > library(testthat)   > library(mice)      Attaching package: 'mice'      The following object is masked from 'package:stats':          filter      The following objects are masked from 'package:base':          cbind, rbind      >   > test_check("mice")   [ FAIL 5 | WARN 0 | SKIP 0 | PASS 373 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-D3.R:23:1'): (code run outside of `test_that()`) ───────────────   Error in `ll(object)`: could not find function "ll"   Backtrace:        ▆     1. ├─mice::D3(fit1 = fit1, fit0 = fit0) at test-D3.R:23:1     2. │ ├─lapply(fit1, glance) %>% bind_rows() %>% pull(.data$logLik)     3. │ └─base::lapply(fit1, glance)     4. │ ├─generics (local) FUN(X[[i]], ...)     5. │ └─broom:::glance.lm(X[[i]], ...)     6. │ ├─base::with(...)     7. │ └─base::with.default(...)     8. │ └─base::eval(substitute(expr), data, enclos = parent.frame())     9. │ └─base::eval(substitute(expr), data, enclos = parent.frame())    10. │ └─tibble::tibble(...)    11. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)    12. │ └─rlang::eval_tidy(xs[[j]], mask)    13. ├─dplyr::pull(., .data$logLik)    14. ├─dplyr::bind_rows(.)    15. │ └─rlang::list2(...)    16. ├─stats::AIC(x)    17. └─stats:::AIC.default(x)   ── Error ('test-anova.R:9:3'): anova.mira() produces silent D1 and D3 ──────────   Error in `ll(object)`: could not find function "ll"   Backtrace:        ▆     1. ├─testthat::expect_silent(z1 <- anova(m2, m1, m0)) at test-anova.R:9:3     2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)     3. │ ├─testthat (local) .capture(...)     4. │ │ ├─withr::with_output_sink(...)     5. │ │ │ └─base::force(code)     6. │ │ ├─base::withCallingHandlers(...)     7. │ │ └─base::withVisible(code)     8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     9. ├─stats::anova(m2, m1, m0)    10. ├─mice:::anova.mira(m2, m1, m0)    11. │ └─lapply(modlist, getfit, 1L) %>% sapply(glance)    12. ├─base::sapply(., glance)    13. │ └─base::lapply(X = X, FUN = FUN, ...)    14. │ ├─generics (local) FUN(X[[i]], ...)    15. │ └─broom:::glance.lm(X[[i]], ...)    16. │ ├─base::with(...)    17. │ └─base::with.default(...)    18. │ └─base::eval(substitute(expr), data, enclos = parent.frame())    19. │ └─base::eval(substitute(expr), data, enclos = parent.frame())    20. │ └─tibble::tibble(...)    21. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)    22. │ └─rlang::eval_tidy(xs[[j]], mask)    23. ├─stats::AIC(x)    24. └─stats:::AIC.default(x)   ── Error ('test-anova.R:14:3'): anova.mira() produces silent with D2 ───────────   Error in `ll(object)`: could not find function "ll"   Backtrace:        ▆     1. ├─testthat::expect_silent(z2a <- anova(m2, m1, m0, method = "D2")) at test-anova.R:14:3     2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)     3. │ ├─testthat (local) .capture(...)     4. │ │ ├─withr::with_output_sink(...)     5. │ │ │ └─base::force(code)     6. │ │ ├─base::withCallingHandlers(...)     7. │ │ └─base::withVisible(code)     8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     9. ├─stats::anova(m2, m1, m0, method = "D2")    10. ├─mice:::anova.mira(m2, m1, m0, method = "D2")    11. │ └─lapply(modlist, getfit, 1L) %>% sapply(glance)    12. ├─base::sapply(., glance)    13. │ └─base::lapply(X = X, FUN = FUN, ...)    14. │ ├─generics (local) FUN(X[[i]], ...)    15. │ └─broom:::glance.lm(X[[i]], ...)    16. │ ├─base::with(...)    17. │ └─base::with.default(...)    18. │ └─base::eval(substitute(expr), data, enclos = parent.frame())    19. │ └─base::eval(substitute(expr), data, enclos = parent.frame())    20. │ └─tibble::tibble(...)    21. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)    22. │ └─rlang::eval_tidy(xs[[j]], mask)    23. ├─stats::AIC(x)    24. └─stats:::AIC.default(x)   ── Error ('test-pool.r.squared.R:9:3'): pool.r.squared mira ────────────────────   Error in `ll(object)`: could not find function "ll"   Backtrace:        ▆     1. ├─base::as.vector(...) at test-pool.r.squared.R:9:3     2. ├─mice::pool.r.squared(fit_mira, adjusted = FALSE)     3. │ ├─base::summary(object, type = "glance")     4. │ └─mice:::summary.mira(object, type = "glance")     5. │ ├─lapply(fitlist, glance, ...) %>% bind_rows()     6. │ └─base::lapply(fitlist, glance, ...)     7. │ ├─generics (local) FUN(X[[i]], ...)     8. │ └─broom:::glance.lm(X[[i]], ...)     9. │ ├─base::with(...)    10. │ └─base::with.default(...)    11. │ └─base::eval(substitute(expr), data, enclos = parent.frame())    12. │ └─base::eval(substitute(expr), data, enclos = parent.frame())    13. │ └─tibble::tibble(...)    14. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)    15. │ └─rlang::eval_tidy(xs[[j]], mask)    16. ├─dplyr::bind_rows(.)    17. │ └─rlang::list2(...)    18. ├─stats::AIC(x)    19. └─stats:::AIC.default(x)   ── Error ('test-pool.r.squared.R:14:3'): r.squared mipo ────────────────────────   Error in `if (nrow(object$glanced) < 2) {       stop("At least two imputations are needed for pooling.\n")   }`: argument is of length zero   Backtrace:       ▆    1. ├─base::as.vector(...) at test-pool.r.squared.R:14:3    2. └─mice::pool.r.squared(fit_mipo, adjusted = FALSE)      [ FAIL 5 | WARN 0 | SKIP 0 | PASS 373 ]   Error: Test failures   Execution halted
• checking PDF version of manual ... [31s] OK
• checking HTML version of manual ... [31s] OK
• DONE

Status: 2 ERRORs