• using R Under development (unstable) (2021-10-07 r81018)
• using platform: x86_64-w64-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'magmaR/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'magmaR' version '1.0.2'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'magmaR' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s] OK
• checking Rd files ... [0s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [1s] OK
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [13s] OK
    Running 'testthat.R' [13s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking re-building of vignette outputs ... [35s] WARNING
  Error(s) in re-building vignettes:
  --- re-building 'Download.Rmd' using rmarkdown
  Loading required namespace: dittoSeq
  Loading required package: ggplot2
  Quitting from lines 425-433 (Download.Rmd)
  Error: processing vignette 'Download.Rmd' failed with diagnostics:
  2 arguments passed to .Internal(is.unsorted) which requires 3
  --- failed re-building 'Download.Rmd'
  
  --- re-building 'Upload.Rmd' using rmarkdown
  net connect disabled
  --- finished re-building 'Upload.Rmd'
  
  SUMMARY: processing the following file failed:
    'Download.Rmd'
  
  Error: Vignette re-building failed.
  Execution halted
  
• checking PDF version of manual ... OK
• DONE

Status: 1 WARNING