• using R Under development (unstable) (2025-09-03 r88788 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.2.0     GNU Fortran (GCC) 14.2.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'invitroTKstats/DESCRIPTION' ... OK
• this is package 'invitroTKstats' version '0.0.13'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'invitroTKstats' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s] OK
• checking whether the package can be unloaded cleanly ... [1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s] OK
• checking whether the namespace can be unloaded cleanly ... [2s] OK
• checking loading without being on the library search path ... [2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s] OK
• checking Rd files ... [4s] OK
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• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
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• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... [0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [2s] ERROR Running examples in 'invitroTKstats-Ex.R' failed The error most likely occurred in: > ### Name: calc_clint_point > ### Title: Calculate a Point Estimate of Intrinsic Hepatic Clearance > ### (Clint) (Level-3) > ### Aliases: calc_clint_point > > ### ** Examples > > ## Load example level-2 data > level2 <- invitroTKstats::clint_L2 > > ## scenario 1: > ## input level-2 data from the R session and do not export the result table > level3 <- calc_clint_point(data.in = level2, output.res = FALSE) Error in UseMethod("logLik") :   no applicable method for 'logLik' applied to an object of class "mle" Calls: calc_clint_point -> AIC -> AIC -> AIC.default -> ll Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [53s] ERROR Error(s) in re-building vignettes: --- re-building 'Appendix_vignette.Rmd' using rmarkdown --- finished re-building 'Appendix_vignette.Rmd' --- re-building 'Caco2_vignette.Rmd' using rmarkdown --- finished re-building 'Caco2_vignette.Rmd' --- re-building 'Clint_vignette.Rmd' using rmarkdown Quitting from Clint_vignette.Rmd:405-410 [L3 processing] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `UseMethod()`: ! no applicable method for 'logLik' applied to an object of class "mle" --- Backtrace:     ▆  1. └─invitroTKstats::calc_clint_point(...)  2. ├─stats::AIC(this.null)  3. ├─stats::AIC(this.null)  4. └─stats:::AIC.default(this.null)  5. └─stats (local) ll(object) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Clint_vignette.Rmd' failed with diagnostics: no applicable method for 'logLik' applied to an object of class "mle" --- failed re-building 'Clint_vignette.Rmd' --- re-building 'Data-guide-and-L0_vignette.Rmd' using rmarkdown --- finished re-building 'Data-guide-and-L0_vignette.Rmd' --- re-building 'FupRED_vignette.Rmd' using rmarkdown --- finished re-building 'FupRED_vignette.Rmd' --- re-building 'FupUC_vignette.Rmd' using rmarkdown --- finished re-building 'FupUC_vignette.Rmd' --- re-building 'plotting-invitroTKstats.Rmd' using rmarkdown --- finished re-building 'plotting-invitroTKstats.Rmd' SUMMARY: processing the following file failed:   'Clint_vignette.Rmd' Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [23s] OK
• checking HTML version of manual ... [15s] OK
• DONE

Status: 2 ERRORs