• using R Under development (unstable) (2026-03-09 r89583 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.3.0     GNU Fortran (GCC) 14.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8 * current time: 2026-03-10 10:48:51 UTC
• checking for file 'immunarch/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'immunarch' version '0.10.3'
• package encoding: UTF-8
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• used C++ compiler: 'g++.exe (GCC) 14.3.0'
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• checking examples ... [10s] ERROR Running examples in 'immunarch-Ex.R' failed The error most likely occurred in: > ### Name: airr_public > ### Title: Public indices - pairwise repertoire overlap > ### Aliases: airr_public airr_public_intersection airr_public_jaccard > > ### ** Examples > > # Limit the number of threads used by the underlying DB for this session. > # Change this only if you know what you're doing (e.g., multi-user machines, shared CI/servers). > db_exec("SET threads TO 1") > # Load data > immdata <- get_test_idata() |> agg_repertoires("Therapy") Rows: 2 Columns: 4 ── Column specification ──────────────────────────────────────────────────────── Delimiter: "\t" chr (4): File, Therapy, Response, Prefix ℹ Use `spec()` to retrieve the full column specification for this data. ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. ℹ Found 2/2 repertoire files from the metadata on the disk ✔ Metadata parsed successfully ── Reading repertoire data   1. D:\RCompile\CRANpkg\lib\4.6\immundata\extdata\tsv\sample_0_1k.tsv   2. D:\RCompile\CRANpkg\lib\4.6\immundata\extdata\tsv\sample_1k_2k.tsv ℹ Checking if all files are of the same type ✔ All files have the same extension ── Renaming the columns and schemas ✔ Renaming is finished ── Preprocessing the data   1. exclude_columns   2. filter_nonproductive ✔ Preprocessing plan is ready ── Aggregating the data to receptors ℹ No locus information found ℹ Processing data as immune repertoire tables - no counts, no barcodes, no chain pairing possible ✔ Execution plan for receptor data aggregation and annotation is ready ── Joining the metadata table with the dataset using 'filename' column ✔ Joining plan is ready ── Postprocessing the data   1. prefix_barcodes ✔ Postprocessing plan is ready ── Saving the newly created ImmunData to disk ℹ Writing the receptor annotation data to [D:\temp\2026_03_10_01_50_00_7065\RtmpUdTkC4\file2e0c738a1fc8/annotations.parquet] Error in `duckfun()`: ! {"exception_type":"Binder","exception_message":"Invalid named parameter \"compression_level\" for function read_parquet\nCandidates:\n binary_as_string BOOLEAN\n can_have_nan BOOLEAN\n compression VARCHAR\n debug_use_openssl BOOLEAN\n encryption_config ANY\n explicit_cardinality UBIGINT\n file_row_number BOOLEAN\n filename ANY\n hive_partitioning BOOLEAN\n hive_types ANY\n hive_types_autocast BOOLEAN\n parquet_version VARCHAR\n schema ANY\n union_by_name BOOLEAN\n"} Backtrace:      ▆   1. ├─immundata::agg_repertoires(get_test_idata(), "Therapy")   2. │ └─checkmate::assert_r6(idata, "ImmunData")   3. │ └─checkmate::checkR6(...)   4. ├─immundata::get_test_idata()   5. │ └─immundata:::get_test_idata_tsv_with_metadata()   6. │ └─immundata::read_repertoires(...)   7. │ └─immundata::write_immundata(idata, output_folder)   8. │ ├─duckplyr::compute_parquet(...)   9. │ └─duckplyr:::compute_parquet.duckplyr_df(...)  10. │ └─duckplyr::read_parquet_duckdb(path, prudence = prudence, options = read_options)  11. │ └─duckplyr::read_file_duckdb(...)  12. │ └─duckplyr:::duckfun(...)  13. │ └─duckdb$rel_from_table_function(...)  14. │ └─duckdb:::rethrow_rapi_rel_from_table_function(...)  15. │ ├─rlang::try_fetch(...)  16. │ │ ├─base::tryCatch(...)  17. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)  18. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])  19. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)  20. │ │ └─base::withCallingHandlers(...)  21. │ └─duckdb:::rapi_rel_from_table_function(...)  22. └─base::.handleSimpleError(...)  23. └─rlang (local) h(simpleError(msg, call))  24. └─handlers[[1L]](cnd)  25. └─duckdb:::rethrow_error_from_rapi(e, call)  26. └─rlang::abort(msg, call = call) Execution halted
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• DONE

Status: 1 ERROR