* installing *source* package 'hkevp' ...
** this is package 'hkevp' version '1.1.5'
** package 'hkevp' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 14.2.0'
make[1]: Entering directory '/d/temp/2025_09_25_01_50_00_17305/Rtmpk1ikpF/R.INSTALL1c200140b138/hkevp/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32,
from RcppExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hkevp.cpp -o hkevp.o
In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32,
from hkevp.cpp:3:
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
hkevp.cpp: In function 'arma::mat HKEVP_llikGEVcore(const arma::mat&, const arma::mat&, const double&, const bool&)':
hkevp.cpp:146:25: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
146 | return arma::is_finite(result)? result : arma::zeros<arma::mat>(y.n_rows, y.n_cols);
| ~~~~~~~~~~~~~~~^~~~~~~~
In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:518:
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
hkevp.cpp: In function 'double HKEVP_llik(const arma::mat&, const arma::mat&, const double&, const arma::mat&, const arma::mat&, const bool&)':
hkevp.cpp:171:34: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
171 | llik_bySites(i) = is_finite(coreGEV) ?
| ~~~~~~~~~^~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
hkevp.cpp:179:34: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
179 | llik_bySites(i) = is_finite(coreGEV) ?
| ~~~~~~~~~^~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
hkevp.cpp: In function 'double latent_llik(const arma::mat&, const arma::mat&, const arma::mat&, const bool&)':
hkevp.cpp:198:34: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
198 | llik_bySites(i) = is_finite(coreGEV) ?
| ~~~~~~~~~^~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
hkevp.cpp:206:34: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
206 | llik_bySites(i) = is_finite(coreGEV) ?
| ~~~~~~~~~^~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
hkevp.cpp: In function 'Rcpp::List mcmc_hkevp(const arma::mat&, const arma::mat&, const arma::mat&, const int&, const int&, const int&, const bool&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const bool&, const arma::vec&, const std::string&, const double&, const double&, const double&, const double&, const double&, const double&, const double&, const double&, const double&, const arma::mat&, const double&, const arma::vec&, const arma::vec&, const arma::vec&, const arma::vec&, const arma::vec&, const arma::vec&, const double&, const double&, const double&, const double&)':
hkevp.cpp:361:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
361 | if (!arma::is_finite(llik_chain(0))) {Rcpp::stop("Bad initialisation: Null Likelihood!");}
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
hkevp.cpp:445:67: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
445 | if ( (exp(A_logratio)>R::runif(0,1)) && (arma::is_finite(A_logratio)))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
hkevp.cpp:474:67: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
474 | if ( (exp(B_logratio)>R::runif(0,1)) && (arma::is_finite(B_logratio)) )
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
hkevp.cpp:505:65: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
505 | if ( (exp(alpha_logratio)>R::runif(0,1)) && (arma::is_finite(alpha_logratio)) )
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
hkevp.cpp:533:63: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
533 | if ( (exp(tau_logratio)>R::runif(0,1)) && (arma::is_finite(tau_logratio)) )
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
hkevp.cpp:572:69: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
572 | if ( (exp(GEV_logratio)>R::runif(0,1)) && (arma::is_finite(GEV_logratio)) )
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
hkevp.cpp:632:69: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
632 | if ( (exp(range_logratio)>R::runif(0,1)) && (arma::is_finite((range_logratio))) ) {
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
hkevp.cpp:651:67: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
651 | if ( (exp(GEV_logratio)>R::runif(0,1)) && (arma::is_finite(GEV_logratio)) ) {
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
hkevp.cpp: In function 'Rcpp::List mcmc_deponly(const arma::mat&, const arma::mat&, const arma::mat&, const int&, const int&, const int&, const bool&, const double&, const arma::mat&, const arma::mat&, const double&, const double&, const double&, const double&, const arma::vec&, const arma::vec&, const double&, const double&, const double&, const double&)':
hkevp.cpp:834:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
834 | if (!arma::is_finite(llik_chain(0))) {Rcpp::stop("Bad initialisation: Null Likelihood!");}
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
hkevp.cpp:904:67: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
904 | if ( (exp(A_logratio)>R::runif(0,1)) && (arma::is_finite(A_logratio)))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
hkevp.cpp:933:67: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
933 | if ( (exp(B_logratio)>R::runif(0,1)) && (arma::is_finite(B_logratio)) )
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
hkevp.cpp:964:65: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
964 | if ( (exp(alpha_logratio)>R::runif(0,1)) && (arma::is_finite(alpha_logratio)) )
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
hkevp.cpp:992:65: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
992 | if ( (exp(tau_logratio) > R::runif(0,1)) && (arma::is_finite(tau_logratio)) )
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
hkevp.cpp: In function 'Rcpp::List mcmc_latent(const arma::mat&, const arma::mat&, const int&, const int&, const int&, const bool&, const arma::mat&, const arma::mat&, const arma::mat&, const bool&, const arma::vec&, const std::string&, const double&, const double&, const double&, const double&, const double&, const arma::mat&, const double&, const arma::vec&, const arma::vec&, const arma::vec&, const arma::vec&)':
hkevp.cpp:1184:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1184 | if (!arma::is_finite(llik_chain(0))) {Rcpp::stop("Bad initialisation: Null Likelihood!");}
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
hkevp.cpp:1249:69: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1249 | if ( (exp(GEV_logratio)>R::runif(0,1)) && (arma::is_finite(GEV_logratio)) )
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
hkevp.cpp:1309:69: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1309 | if ( (exp(range_logratio)>R::runif(0,1)) && (arma::is_finite((range_logratio))) ) {
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
hkevp.cpp:1328:67: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1328 | if ( (exp(GEV_logratio)>R::runif(0,1)) && (arma::is_finite(GEV_logratio)) ) {
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o hkevp.dll tmp.def RcppExports.o hkevp.o -fopenmp -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_09_25_01_50_00_17305/Rtmpk1ikpF/R.INSTALL1c200140b138/hkevp/src'
make[1]: Entering directory '/d/temp/2025_09_25_01_50_00_17305/Rtmpk1ikpF/R.INSTALL1c200140b138/hkevp/src'
make[1]: Leaving directory '/d/temp/2025_09_25_01_50_00_17305/Rtmpk1ikpF/R.INSTALL1c200140b138/hkevp/src'
installing to d:/Rcompile/CRANpkg/lib/4.6/00LOCK-hkevp/00new/hkevp/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'hkevp' as hkevp_1.1.5.zip
* DONE (hkevp)