• using R Under development (unstable) (2026-07-28 r90311 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.3.0     GNU Fortran (GCC) 14.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8 * current time: 2026-07-29 15:25:13 UTC
• checking for file 'haplo.stats/DESCRIPTION' ... OK
• this is package 'haplo.stats' version '1.9.8.7'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'haplo.stats' can be installed ... OK See the install log for details.
• used C compiler: 'gcc.exe (GCC) 14.3.0'
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s] OK
• checking whether the package can be unloaded cleanly ... [1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s] OK
• checking loading without being on the library search path ... [0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s] OK
• checking Rd files ... [2s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... [0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compiled code ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [5s] OK
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [37s] ERROR   Running 'testthat.R' [37s] Running the tests in 'tests/testthat.R' failed. Complete output:   > library(testthat)   > library(haplo.stats)   Loading required package: arsenal   Loading required package: MASS   >   > test_check("haplo.stats")   Saving _problems/test.haplo.cc-52.R   [ FAIL 1 | WARN 0 | SKIP 0 | PASS 7 ]      == Failed tests ================================================================   -- Failure ('test.haplo.cc.R:52:3'): Data.frames from haplo.cc -----------------   Expected `cc.hla.adj$cc.df` to equal `cc.hla.adj.save$cc.df`.   Differences:   Attributes: < Component "row.names": Numeric: lengths (219, 224) differ >   Component "DQB": Lengths (219, 224) differ (string compare on first 219)   Component "DQB": 52 string mismatches   Component "DRB": Lengths (219, 224) differ (string compare on first 219)   Component "DRB": 130 string mismatches   Component "B": Lengths (219, 224) differ (string compare on first 219)   Component "B": 187 string mismatches   Component "Hap-Score": Numeric: lengths (219, 224) differ   Component "p-val": Numeric: lengths (219, 224) differ   ...      [ FAIL 1 | WARN 0 | SKIP 0 | PASS 7 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [1s] OK
• checking PDF version of manual ... [21s] OK
• checking HTML version of manual ... [5s] OK
• DONE

Status: 1 ERROR