• using R Under development (unstable) (2026-08-10 r90389 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.3.0     GNU Fortran (GCC) 14.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8 * current time: 2026-08-11 17:28:45 UTC
• checking for file 'glossa/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'glossa' version '1.2.4'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... INFO Package suggested but not available for checking: 'flexsdm'
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'glossa' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s] OK
• checking whether the package can be loaded with stated dependencies ... [4s] OK
• checking whether the package can be unloaded cleanly ... [4s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s] OK
• checking whether the namespace can be unloaded cleanly ... [4s] OK
• checking loading without being on the library search path ... [4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [14s] OK
• checking Rd files ... [1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [5s] OK
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [18s] ERROR   Running 'testthat.R' [18s] Running the tests in 'tests/testthat.R' failed. Complete output:   > library(testthat)   > library(glossa)   Loading required package: bs4Dash      Attaching package: 'bs4Dash'      The following object is masked from 'package:graphics':          box      Loading required package: shiny      Attaching package: 'shiny'      The following objects are masked from 'package:bs4Dash':          actionButton, column, insertTab, navbarMenu, tabsetPanel      > library(terra)   terra 1.9.34      Attaching package: 'terra'      The following objects are masked from 'package:testthat':          compare, describe      > library(sf)   Linking to GEOS 3.14.1, GDAL 3.12.1, PROJ 9.7.1; sf_use_s2() is TRUE   >   > test_check("glossa")        |     | | 0%     |     |= | 2%     |     |=== | 4%     |     |==== | 6%     |     |====== | 8%     |     |======= | 10%     |     |======== | 12%     |     |========== | 14%     |     |=========== | 16%     |     |============= | 18%     |     |============== | 20%     |     |=============== | 22%     | 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    |     |================================================================ | 92%     |     |================================================================== | 94%     |     |=================================================================== | 96%     |     |===================================================================== | 98%     |     |======================================================================| 100%     train_0 train_1 test_0 test_1   1 4 3 15 28   2 15 28 4 3   Spherical geometry (s2) switched off   Spherical geometry (s2) switched on        |     | | 0%     |     |= | 2%     |     |=== | 4%     |     |==== | 6%     |     |====== | 8%     |     |======= | 10%     |     |======== | 12%     |     |========== | 14%     |     |=========== | 16%     |     |============= | 18%     |     |============== | 20%     |     |=============== | 22%     |     |================= | 24%     |     |================== | 26%     |     |==================== | 28%     | 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    |================================================ | 68%     |     |================================================= | 70%     |     |================================================== | 72%     |     |==================================================== | 74%     |     |===================================================== | 76%     |     |======================================================= | 78%     |     |======================================================== | 80%     |     |========================================================= | 82%     |     |=========================================================== | 84%     |     |============================================================ | 86%     |     |============================================================== | 88%     |     |=============================================================== | 90%     |     |================================================================ | 92%     |     |================================================================== | 94%     |     |=================================================================== | 96%     |     |===================================================================== | 98%     |     |======================================================================| 100%     train_0 train_1 test_0 test_1   1 9 16 10 15   2 10 15 9 16   Spherical geometry (s2) switched off   Spherical geometry (s2) switched on   Spherical geometry (s2) switched off   Spherical geometry (s2) switched on        |     | | 0%     |     |= | 2%     |     |=== | 4%     |     |==== | 6%     |     |====== | 8%     |     |======= | 10%     |     |======== | 12%     |     |========== | 14%     |     |=========== | 16%     |     |============= | 18%     |     |============== | 20%     |     |=============== | 22%     |     |================= | 24%     |     |================== | 26%     |     |==================== | 28%     | 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    |================================================ | 68%     |     |================================================= | 70%     |     |================================================== | 72%     |     |==================================================== | 74%     |     |===================================================== | 76%     |     |======================================================= | 78%     |     |======================================================== | 80%     |     |========================================================= | 82%     |     |=========================================================== | 84%     |     |============================================================ | 86%     |     |============================================================== | 88%     |     |=============================================================== | 90%     |     |================================================================ | 92%     |     |================================================================== | 94%     |     |=================================================================== | 96%     |     |===================================================================== | 98%     |     |======================================================================| 100%     train_0 train_1 test_0 test_1   1 9 11 5 5   2 9 10 5 6   3 10 11 4 5   Spherical geometry (s2) switched off   Spherical geometry (s2) switched on   Spherical geometry (s2) switched off   Spherical geometry (s2) switched on   Saving _problems/test-cross_validate_model-118.R   Saving _problems/test-cross_validate_model-158.R   dist is assumed to be in decimal degrees (arc_degrees).   dist is assumed to be in decimal degrees (arc_degrees).   although coordinates are longitude/latitude, st_difference assumes that they   are planar   although coordinates are longitude/latitude, st_difference assumes that they   are planar   Running thinning with method 'precision' and thinning value 1   Running thinning with method 'precision' and thinning value 1   Running thinning with method 'distance' and thinning value 5e+05   Running thinning with method 'grid' and thinning value 0.05   Running thinning with method 'precision' and thinning value 3   [ FAIL 2 | WARN 0 | SKIP 12 | PASS 85 ]      ══ Skipped tests (12) ══════════════════════════════════════════════════════════   • On CRAN (11): 'test-glossa_analysis.R:5:3', 'test-process_layers.R:5:3',     'test-process_polygon.R:5:3', 'test-read_validate_files.R:5:3',     'test-read_validate_files.R:18:3', 'test-read_validate_files.R:30:3',     'test-read_validate_files.R:42:3', 'test-read_validate_files.R:54:3',     'test-read_validate_files.R:78:3', 'test-read_validate_files.R:104:3',     'test-utils.R:4:3'   • {flexsdm} is not installed (1): 'test-generate_pseudo_absences.R:98:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-cross_validate_model.R:118:3'): cross_validate_model runs ──────   Error in `parse(text = deparse(RNGkind)[-1L])`: <text>:1:22: unexpected ')'   1: binom.kind = NULL)                            ^   Backtrace:        ▆     1. └─glossa::cross_validate_model(...) at test-cross_validate_model.R:118:3     2. └─glossa::fit_bart_model(...)     3. └─dbarts::bart(...)     4. └─dbarts::dbartsControl(...)     5. └─methods::new(...)     6. ├─methods::initialize(value, ...)     7. └─dbarts (local) initialize(value, ...)     8. ├─methods::callNextMethod()     9. └─methods (local) .nextMethod(.Object = .Object, ... = ...)    10. └─methods::validObject(.Object)    11. ├─methods (local) anyStrings(validityMethod(object))    12. │ └─base::isTRUE(x)    13. └─dbarts (local) validityMethod(object)    14. └─base::parse(text = deparse(RNGkind)[-1L])   ── Error ('test-cross_validate_model.R:158:3'): cross_validate_model is reproducible with seed ──   Error in `parse(text = deparse(RNGkind)[-1L])`: <text>:1:22: unexpected ')'   1: binom.kind = NULL)                            ^   Backtrace:        ▆     1. └─glossa::cross_validate_model(...) at test-cross_validate_model.R:158:3     2. └─glossa::fit_bart_model(...)     3. └─dbarts::bart(...)     4. └─dbarts::dbartsControl(...)     5. └─methods::new(...)     6. ├─methods::initialize(value, ...)     7. └─dbarts (local) initialize(value, ...)     8. ├─methods::callNextMethod()     9. └─methods (local) .nextMethod(.Object = .Object, ... = ...)    10. └─methods::validObject(.Object)    11. ├─methods (local) anyStrings(validityMethod(object))    12. │ └─base::isTRUE(x)    13. └─dbarts (local) validityMethod(object)    14. └─base::parse(text = deparse(RNGkind)[-1L])      [ FAIL 2 | WARN 0 | SKIP 12 | PASS 85 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... [21s] OK
• checking HTML version of manual ... [2s] OK
• DONE

Status: 1 ERROR