- using R Under development (unstable) (2023-09-29 r85235 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 12.2.0
GNU Fortran (GCC) 12.2.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'fwb/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'fwb' version '0.1.1'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'fwb' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s] OK
- checking whether the package can be unloaded cleanly ... [0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s] OK
- checking loading without being on the library search path ... [0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [4s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [2s] ERROR
Running examples in 'fwb-Ex.R' failed
The error most likely occurred in:
> ### Name: fwb
> ### Title: Fractional Weighted Bootstrap
> ### Aliases: fwb print.fwb
>
> ### ** Examples
>
> ## Don't show:
> if (requireNamespace("survival", quietly = TRUE)) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ # Performing a Weibull analysis of the Bearing Cage
+ # failure data as done in Xu et al. (2020)
+ data("bearingcage")
+
+ weibull_est <- function(data, w) {
+ fit <- survival::survreg(survival::Surv(hours, failure) ~ 1,
+ data = data, weights = w,
+ dist = "weibull")
+
+ c(eta = unname(exp(coef(fit))), beta = 1/fit$scale)
+ }
+
+ boot_est <- fwb(bearingcage, statistic = weibull_est,
+ R = 199, verbose = FALSE)
+ boot_est
+
+ #Get standard errors and CIs; uses bias-corrected
+ #percentile CI by default
+ summary(boot_est, ci.type = "bc")
+
+ #Plot statistic distributions
+ plot(boot_est, index = "beta", type = "hist")
+
+ ## Don't show:
+ }) # examplesIf
> data("bearingcage")
> weibull_est <- function(data, w) {
+ fit <- survival::survreg(survival::Surv(hours, failure) ~ 1, data = data, weights = w,
+ dist = "weibull")
+ c(eta = unname(exp(coef(fit))), beta = 1/fit$scale)
+ }
> boot_est <- fwb(bearingcage, statistic = weibull_est, R = 199, verbose = FALSE)
Error in `fwb()`:
! `cluster` must be atomic.
Backtrace:
▆
1. ├─(if (getRversion() >= "3.4") withAutoprint else force)(...)
2. │ └─base::source(...)
3. │ ├─base::withVisible(eval(ei, envir))
4. │ └─base::eval(ei, envir)
5. │ └─base::eval(ei, envir)
6. └─fwb::fwb(bearingcage, statistic = weibull_est, R = 199, verbose = FALSE)
7. └─chk::chk_atomic(cluster)
8. └─chk::abort_chk(x_name, " must be atomic", x = x)
9. └─chk::err(..., n = n, tidy = tidy, class = "chk_error", call = call)
10. └─rlang::abort(msg, class = class, !!!args[named], call = call)
Execution halted
- checking PDF version of manual ... [22s] OK
- checking HTML version of manual ... [2s] OK
- DONE
Status: 1 ERROR