* installing *source* package 'fishmethods' ...
** package 'fishmethods' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 12.3.0'
make[1]: Entering directory '/d/temp/RtmpEJRrvy/R.INSTALL2b14c4a265485/fishmethods/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/TMB/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init_dummy_file.cpp -o init_dummy_file.o
(cd TMB; D:/RCompile/recent/R/bin/x64/Rscript \
--no-save --no-restore compile.R '')
using C++ compiler: 'g++.exe (GCC) 12.3.0'
make[2]: Entering directory '/d/temp/RtmpEJRrvy/R.INSTALL2b14c4a265485/fishmethods/src/TMB'
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"D:/RCompile/CRANpkg/lib/4.4/TMB/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_fishmethods_TMBExports -DCPPAD_FRAMEWORK -I'D:/RCompile/CRANpkg/lib/4.4/TMB/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fishmethods_TMBExports.cpp -o fishmethods_TMBExports.o
In file included from D:/RCompile/CRANpkg/lib/4.4/TMB/include/TMB.hpp:41,
from fishmethods_TMBExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.4/TMB/include/Rstream.hpp: In member function 'std::streamsize Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]':
D:/RCompile/CRANpkg/lib/4.4/TMB/include/Rstream.hpp:43:15: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=]
43 | Rprintf( "%.*s", num, s ) ;
| ~~^~ ~~~
| | |
| int std::streamsize {aka long long int}
D:/RCompile/CRANpkg/lib/4.4/TMB/include/Rstream.hpp: In member function 'std::streamsize Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]':
D:/RCompile/CRANpkg/lib/4.4/TMB/include/Rstream.hpp:47:16: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=]
47 | REprintf( "%.*s", num, s ) ;
| ~~^~ ~~~
| | |
| int std::streamsize {aka long long int}
D:/RCompile/CRANpkg/lib/4.4/TMB/include/Rstream.hpp: In member function 'int Rstreambuf<OUTPUT>::overflow(int) [with bool OUTPUT = true]':
D:/RCompile/CRANpkg/lib/4.4/TMB/include/Rstream.hpp:51:30: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'int*' [-Wformat=]
51 | if (c != EOF) Rprintf( "%.1s", &c ) ;
| ~~~^ ~~
| | |
| | int*
| char*
| %.1n
D:/RCompile/CRANpkg/lib/4.4/TMB/include/Rstream.hpp: In member function 'int Rstreambuf<OUTPUT>::overflow(int) [with bool OUTPUT = false]':
D:/RCompile/CRANpkg/lib/4.4/TMB/include/Rstream.hpp:55:31: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'int*' [-Wformat=]
55 | if (c != EOF) REprintf( "%.1s", &c ) ;
| ~~~^ ~~
| | |
| | int*
| char*
| %.1n
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppEigen/include/Eigen/Core:503,
from D:/RCompile/CRANpkg/lib/4.4/RcppEigen/include/Eigen/Dense:1,
from D:/RCompile/CRANpkg/lib/4.4/TMB/include/TMB.hpp:83:
D:/RCompile/CRANpkg/lib/4.4/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h: In function 'static void Eigen::internal::selfadjoint_product_impl<Lhs, LhsMode, false, Rhs, 0, true>::run(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; Lhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int LhsMode = 17; Rhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >]':
D:/RCompile/CRANpkg/lib/4.4/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:227:7: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized]
225 | internal::selfadjoint_matrix_vector_product<Scalar, Index, (internal::traits<ActualLhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
226 | int(LhsUpLo), bool(LhsBlasTraits::NeedToConjugate), bool(RhsBlasTraits::NeedToConjugate)>::run
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
227 | (
| ^
228 | lhs.rows(), // size
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
229 | &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
230 | actualRhsPtr, // rhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
231 | actualDestPtr, // result info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
232 | actualAlpha // scale factor
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
233 | );
| ~
D:/RCompile/CRANpkg/lib/4.4/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:39:24: note: by argument 4 of type 'const double*' to 'static void Eigen::internal::selfadjoint_matrix_vector_product<Scalar, Index, StorageOrder, UpLo, ConjugateLhs, ConjugateRhs, Version>::run(Index, const Scalar*, Index, const Scalar*, Scalar*, Scalar) [with Scalar = double; Index = long long int; int StorageOrder = 0; int UpLo = 1; bool ConjugateLhs = false; bool ConjugateRhs = false; int Version = 0]' declared here
39 | EIGEN_DONT_INLINE void selfadjoint_matrix_vector_product<Scalar,Index,StorageOrder,UpLo,ConjugateLhs,ConjugateRhs,Version>::run(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o fishmethods_TMBExports.dll tmp.def fishmethods_TMBExports.o -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[2]: Leaving directory '/d/temp/RtmpEJRrvy/R.INSTALL2b14c4a265485/fishmethods/src/TMB'
make[2]: Entering directory '/d/temp/RtmpEJRrvy/R.INSTALL2b14c4a265485/fishmethods/src/TMB'
make[2]: Leaving directory '/d/temp/RtmpEJRrvy/R.INSTALL2b14c4a265485/fishmethods/src/TMB'
[1] TRUE
D:\rtools43\x86_64-w64-mingw32.static.posix\bin\nm.exe: 'tmblib': No such file
g++ -std=gnu++17 -shared -s -static-libgcc -o fishmethods.dll tmp.def init_dummy_file.o -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/RtmpEJRrvy/R.INSTALL2b14c4a265485/fishmethods/src'
make[1]: Entering directory '/d/temp/RtmpEJRrvy/R.INSTALL2b14c4a265485/fishmethods/src'
make[1]: Leaving directory '/d/temp/RtmpEJRrvy/R.INSTALL2b14c4a265485/fishmethods/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-fishmethods/00new/fishmethods/libs/x64
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'fishmethods' as fishmethods_1.12-1.zip
* DONE (fishmethods)