- using R Under development (unstable) (2025-10-13 r88918 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'ez/DESCRIPTION' ... OK
- this is package 'ez' version '4.4-0'
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'ez' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s] OK
- checking whether the package can be loaded with stated dependencies ... [3s] OK
- checking whether the package can be unloaded cleanly ... [3s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s] OK
- checking whether the namespace can be unloaded cleanly ... [3s] OK
- checking loading without being on the library search path ... [3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [13s] OK
- checking Rd files ... [1s] NOTE
checkRd: (-1) ez-package.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:33: Lost braces in \itemize; meant \describe ?
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [0s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [19s] ERROR
Running examples in 'ez-Ex.R' failed
The error most likely occurred in:
> ### Name: ezPlot
> ### Title: Plot data from a factorial experiment
> ### Aliases: ezPlot
>
> ### ** Examples
>
> #Read in the ANT data (see ?ANT).
> data(ANT)
> head(ANT)
subnum group block trial cue flank location direction rt
1 1 Treatment 1 1 None Neutral up left 398.6773
2 1 Treatment 1 2 Center Neutral up left 389.1822
3 1 Treatment 1 3 Double Neutral up left 333.2186
4 1 Treatment 1 4 Spatial Neutral up left 419.7640
5 1 Treatment 1 5 None Congruent up left 446.4754
6 1 Treatment 1 6 Center Congruent up left 338.9766
error
1 0
2 0
3 0
4 0
5 0
6 0
> ezPrecis(ANT)
Data frame dimensions: 5760 rows, 10 columns
type missing values min max
subnum factor 0 20 1 20
group factor 0 2 Control Treatment
block numeric 0 6 1 6
trial numeric 0 48 1 48
cue factor 0 4 None Spatial
flank factor 0 3 Neutral Incongruent
location factor 0 2 down up
direction factor 0 2 left right
rt numeric 0 5760 179.5972 657.6986
error numeric 0 2 0 1
>
>
> ## Not run:
> ##D #Run an ANOVA on the mean correct RT data.
> ##D mean_rt_anova = ezANOVA(
> ##D data = ANT[ANT$error==0,]
> ##D , dv = .(rt)
> ##D , wid = .(subnum)
> ##D , within = .(cue,flank)
> ##D , between = .(group)
> ##D )
> ##D
> ##D #Show the ANOVA and assumption tests.
> ##D print(mean_rt_anova)
> ## End(Not run)
>
> #Plot the main effect of group.
> group_plot = ezPlot(
+ data = ANT[ANT$error==0,]
+ , dv = .(rt)
+ , wid = .(subnum)
+ , between = .(group)
+ , x = .(group)
+ , do_lines = FALSE
+ , x_lab = 'Group'
+ , y_lab = 'RT (ms)'
+ )
Warning: Collapsing data to cell means. *IF* the requested effects are a subset of the full design, you must use the "within_full" argument, else results may be inaccurate.
Coefficient covariances computed by hccm()
>
> #Show the plot.
> print(group_plot)
>
> #tweak the plot
> # group_plot = group_plot +
> # theme(
> # panel.grid.major = element_blank()
> # , panel.grid.minor = element_blank()
> # )
> # print(group_plot)
>
>
>
> #use the "print_code" argument to print the
> # code for creating the plot and return the
> # data to plot. This is useful when you want
> # to learn how to create plots from scratch
> # (which can in turn be useful when you can't
> # get a combination of ezPlot and tweaking to
> # achieve what you want)
> group_plot_data = ezPlot(
+ data = ANT[ANT$error==0,]
+ , dv = .(rt)
+ , wid = .(subnum)
+ , between = .(group)
+ , x = .(group)
+ , do_lines = FALSE
+ , x_lab = 'Group'
+ , y_lab = 'RT (ms)'
+ , print_code = TRUE
+ )
Warning: Collapsing data to cell means. *IF* the requested effects are a subset of the full design, you must use the "within_full" argument, else results may be inaccurate.
Coefficient covariances computed by hccm()
ggplot(
data = stats
, mapping = aes(
y = Mean
, x = group
)
)+
geom_point()+
geom_errorbar(
mapping = aes(
ymin = lo
, ymax = hi
)
, linetype = 1
, show.legend = FALSE
, width = 0.25
, alpha = .5
)+
labs(
x = 'Group'
, y = 'RT (ms)'
)>
>
> #Re-plot the main effect of group, using the levels
> ##argument to re-arrange/rename levels of group
> group_plot = ezPlot(
+ data = ANT[ANT$error==0,]
+ , dv = .(rt)
+ , wid = .(subnum)
+ , between = .(group)
+ , x = .(group)
+ , do_lines = FALSE
+ , x_lab = 'Group'
+ , y_lab = 'RT (ms)'
+ , levels = list(
+ group = list(
+ new_order = c('Treatment','Control')
+ , new_names = c('Treatment\nGroup','Control\nGroup')
+ )
+ )
+ )
Warning: Collapsing data to cell means. *IF* the requested effects are a subset of the full design, you must use the "within_full" argument, else results may be inaccurate.
Coefficient covariances computed by hccm()
>
> #Show the plot.
> print(group_plot)
>
>
> #Plot the cue*flank interaction.
> cue_by_flank_plot = ezPlot(
+ data = ANT[ANT$error==0,]
+ , dv = .(rt)
+ , wid = .(subnum)
+ , within = .(cue,flank)
+ , x = .(flank)
+ , split = .(cue)
+ , x_lab = 'Flanker'
+ , y_lab = 'RT (ms)'
+ , split_lab = 'Cue'
+ )
Warning: Collapsing data to cell means. *IF* the requested effects are a subset of the full design, you must use the "within_full" argument, else results may be inaccurate.
>
> #Show the plot.
> print(cue_by_flank_plot)
>
>
> #Plot the cue*flank interaction by collapsing the cue effect to
> ##the difference between None and Double
> cue_by_flank_plot2 = ezPlot(
+ data = ANT[ ANT$error==0 & (ANT$cue %in% c('None','Double')) ,]
+ , dv = .(rt)
+ , wid = .(subnum)
+ , within = .(flank)
+ , diff = .(cue)
+ , reverse_diff = TRUE
+ , x = .(flank)
+ , x_lab = 'Flanker'
+ , y_lab = 'RT Effect (None - Double, ms)'
+ )
Warning: Collapsing data to cell means. *IF* the requested effects are a subset of the full design, you must use the "within_full" argument, else results may be inaccurate.
Warning: Collapsing "cue" to a difference score ("None"-"Double") prior to computing statistics.
>
> #Show the plot.
> print(cue_by_flank_plot2)
>
>
>
> #Plot the group*cue*flank interaction.
> group_by_cue_by_flank_plot = ezPlot(
+ data = ANT[ANT$error==0,]
+ , dv = .(rt)
+ , wid = .(subnum)
+ , within = .(cue,flank)
+ , between = .(group)
+ , x = .(flank)
+ , split = .(cue)
+ , col = .(group)
+ , x_lab = 'Flanker'
+ , y_lab = 'RT (ms)'
+ , split_lab = 'Cue'
+ )
Warning: Collapsing data to cell means. *IF* the requested effects are a subset of the full design, you must use the "within_full" argument, else results may be inaccurate.
Warning: Mixed within-and-between-Ss effect requested; FLSD is only appropriate for within-Ss comparisons (see warning in ?ezStats or ?ezPlot).
Error:
! The `facets` argument of `facet_grid()` was deprecated in ggplot2
2.2.0 and is now defunct.
ℹ Please use the `rows` argument instead.
Backtrace:
▆
1. └─ez::ezPlot(...)
2. ├─base::eval(parse(text = p))
3. │ └─base::eval(parse(text = p))
4. └─ggplot2::facet_grid(facets = . ~ group, scales = "free_y")
5. └─lifecycle::deprecate_stop("2.2.0", "facet_grid(facets)", "facet_grid(rows)")
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
Execution halted
- checking PDF version of manual ... [27s] OK
- checking HTML version of manual ... [4s] OK
- DONE
Status: 1 ERROR, 1 NOTE