- using R Under development (unstable) (2026-08-31 r90457 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 14.3.0
GNU Fortran (GCC) 14.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
* current time: 2026-09-01 14:37:06 UTC
- checking for file 'ecorisk/DESCRIPTION' ... OK
- this is package 'ecorisk' version '0.3.1'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'ecorisk' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s] OK
- checking whether the package can be loaded with stated dependencies ... [0s] OK
- checking whether the package can be unloaded cleanly ... [0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s] OK
- checking loading without being on the library search path ... [2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [12s] OK
- checking Rd files ... [2s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [20s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [55s] ERROR
Running 'testthat.R' [55s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(ecorisk)
>
> test_check("ecorisk")
[[1]]
[[2]]
[[3]]
[[4]]
[[1]]
[[2]]
Saving _problems/test-plotting_functions-22.R
Please review the model diagnostics of the GAMs applied in the time series based sensitivity scoring using the function plot_diagnostic_sensitivity(). Remove models with unacceptable diagnostics from the output table of this function.
Please review the model diagnostics of the GAMs applied in the time series based sensitivity scoring using the function plot_diagnostic_sensitivity(). Remove models with unacceptable diagnostics from the output table of this function.
Please review the model diagnostics of the GAMs applied in the time series based sensitivity scoring using the function plot_diagnostic_sensitivity(). Remove models with unacceptable diagnostics from the output table of this function.
Please review the model diagnostics of the GAMs applied in the time series based sensitivity scoring using the function plot_diagnostic_sensitivity(). Remove models with unacceptable diagnostics from the output table of this function.
Please review the model diagnostics of the GAMs applied in the time series based sensitivity scoring using the function plot_diagnostic_sensitivity(). Remove models with unacceptable diagnostics from the output table of this function.
Please review the model diagnostics of the GAMs applied in the time series based sensitivity scoring using the function plot_diagnostic_sensitivity(). Remove models with unacceptable diagnostics from the output table of this function.
Please review the model diagnostics of the GAMs applied in the time series based sensitivity scoring using the function plot_diagnostic_sensitivity(). Remove models with unacceptable diagnostics from the output table of this function.
Please review the model diagnostics of the GAMs applied in the time series based sensitivity scoring using the function plot_diagnostic_sensitivity(). Remove models with unacceptable diagnostics from the output table of this function.
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 450 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-plotting_functions.R:19:3'): plotting functions give a known output ──
Error: Package "mgcViz" must be installed to use this function.
Backtrace:
▆
1. └─ecorisk::plot_diagnostic_sensitivity(...) at test-plotting_functions.R:19:3
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 450 ]
Deleting unused snapshots: 'plotting_functions/diagnostic-plot.svg'
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [14s] ERROR
Error(s) in re-building vignettes:
--- re-building 'ecorisk.Rmd' using rmarkdown
Quitting from ecorisk.Rmd:718-723 [model diagnostics sensitivity]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Package "mgcViz" must be installed to use this function.
---
Backtrace:
▆
1. └─ecorisk::plot_diagnostic_sensitivity(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ecorisk.Rmd' failed with diagnostics:
Package "mgcViz" must be installed to use this function.
--- failed re-building 'ecorisk.Rmd'
SUMMARY: processing the following file failed:
'ecorisk.Rmd'
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [22s] OK
- checking HTML version of manual ... [3s] OK
- DONE
Status: 2 ERRORs