* using log directory 'd:/Rcompile/CRANpkg/local/4.7/dsROCrate.Rcheck'
* using R Under development (unstable) (2026-09-10 r90519 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-09-11 14:38:30 UTC
* checking for file 'dsROCrate/DESCRIPTION' ... OK
* this is package 'dsROCrate' version '0.2.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'dsROCrate' can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-windows-x86_64/dsROCrate-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s] OK
* checking whether the package can be unloaded cleanly ... [0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s] OK
* checking whether the namespace can be unloaded cleanly ... [1s] OK
* checking loading without being on the library search path ... [0s] OK
* checking whether startup messages can be suppressed ... [0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [1s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [9s] OK
  Running 'testthat.R' [9s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [14s] ERROR
Error(s) in re-building vignettes:
--- re-building 'audit-permissions.Rmd' using rmarkdown
--- finished re-building 'audit-permissions.Rmd'

--- re-building 'deploy-local-datashield-server-with-opal.Rmd' using rmarkdown
--- finished re-building 'deploy-local-datashield-server-with-opal.Rmd'

--- re-building 'getting-started.Rmd' using rmarkdown

Quitting from getting-started.Rmd:353-358 [safe_outputs]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/purrr_error_indexed>
Error in `purrr::map()`:
ℹ In index: 123.
Caused by error in `purrr::map()`:
ℹ In index: 5.
ℹ With name: ..5.
---
Backtrace:
     ▆
  1. ├─dsROCrate::safe_output(...)
  2. ├─dsROCrate:::safe_output.opal(...)
  3. │ └─dsROCrate:::calls_to_tbl(calls_lst, registry)
  4. │   ├─purrr::list_rbind(...)
  5. │   │ └─purrr:::check_list_of_data_frames(x)
  6. │   │   └─vctrs::obj_check_list(x, call = error_call)
  7. │   └─purrr::map(...)
  8. │     └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
  9. │       ├─purrr:::with_indexed_errors(...)
 10. │       │ └─base::withCallingHandlers(...)
 11. │       ├─purrr:::call_with_cleanup(...)
 12. │       └─dsROCrate (local) .f(.x[[i]], ...)
 13. │         └─tibble::tibble(...)
 14. │           └─tibble:::tibble_quos(xs, .rows, .name_repair)
 15. │             └─rlang::eval_tidy(xs[[j]], mask)
 16. ├─purrr::map(...)
 17. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
 18. │   ├─purrr:::with_indexed_errors(...)
 19. │   │ └─base::withCallingHandlers(...)
 20. │   ├─purrr:::call_with_cleanup(...)
 21. │   └─dsROCrate (local) .f(.x[[i]], ...)
 22. │     └─dsROCrate:::resolve_symbol_asset(x$symbol_id, registry)
 23. │       └─dsROCrate:::resolve_provenance(symbol_id, registry)
 24. │         └─purrr::map_dfr(...)
 25. │           └─purrr::map(.x, .f, ...)
 26. │             └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
 27. │               ├─purrr:::with_indexed_errors(...)
 28. │               │ └─base::withCallingHandlers(...)
 29. │               ├─purrr:::call_with_cleanup(...)
 30. │               └─dsROCrate (local) .f(.x[[i]], ...)
 31. ├─purrr (local) `<fn>`(`<sbscOOBE>`)
 32. │ └─cli::cli_abort(...)
 33. │   └─rlang::abort(...)
 34. │     └─rlang:::signal_abort(cnd, .file)
 35. │       └─base::signalCondition(cnd)
 36. └─purrr (local) `<fn>`(`<prrr_rr_>`)
 37.   └─cli::cli_abort(...)
---
Caused by error in `map()`:
ℹ In index: 1.
Caused by error in `sym$depends_on[[1]]`:
! subscript out of bounds
---
Backtrace:
     ▆
  1. ├─dsROCrate::safe_output(...)
  2. ├─dsROCrate:::safe_output.opal(...)
  3. │ └─dsROCrate:::calls_to_tbl(calls_lst, registry)
  4. │   ├─purrr::list_rbind(...)
  5. │   │ └─purrr:::check_list_of_data_frames(x)
  6. │   │   └─vctrs::obj_check_list(x, call = error_call)
  7. │   └─purrr::map(...)
  8. │     └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
  9. │       ├─purrr:::with_indexed_errors(...)
 10. │       │ └─base::withCallingHandlers(...)
 11. │       ├─purrr:::call_with_cleanup(...)
 12. │       └─dsROCrate (local) .f(.x[[i]], ...)
 13. │         └─tibble::tibble(...)
 14. │           └─tibble:::tibble_quos(xs, .rows, .name_repair)
 15. │             └─rlang::eval_tidy(xs[[j]], mask)
 16. └─purrr::map(...)
 17.   └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
 18.     ├─purrr:::with_indexed_errors(...)
 19.     │ └─base::withCallingHandlers(...)
 20.     ├─purrr:::call_with_cleanup(...)
 21.     └─dsROCrate (local) .f(.x[[i]], ...)
 22.       └─dsROCrate:::resolve_symbol_asset(x$symbol_id, registry)
 23.         └─dsROCrate:::resolve_provenance(symbol_id, registry)
 24.           └─purrr::map_dfr(...)
 25.             └─purrr::map(.x, .f, ...)
 26.               └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
 27.                 ├─purrr:::with_indexed_errors(...)
 28.                 │ └─base::withCallingHandlers(...)
 29.                 ├─purrr:::call_with_cleanup(...)
 30.                 └─dsROCrate (local) .f(.x[[i]], ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'getting-started.Rmd' failed with diagnostics:
ℹ In index: 123.
Caused by error in `purrr::map()`:
ℹ In index: 5.
ℹ With name: ..5.
Caused by error in `map()`:
ℹ In index: 1.
Caused by error in `sym$depends_on[[1]]`:
! subscript out of bounds
--- failed re-building 'getting-started.Rmd'

SUMMARY: processing the following file failed:
  'getting-started.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [20s] OK
* checking HTML version of manual ... [2s] OK
* DONE
Status: 1 ERROR