* installing *source* package 'communication' ...
** this is package 'communication' version '0.1'
** package 'communication' successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++11
using C++ compiler: 'g++.exe (GCC) 14.3.0'
make[1]: Entering directory '/d/temp/2026_01_07_09_26_23_3239/Rtmp0OLwZx/R.INSTALL1971871567b44/communication/src'
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c hmm.cpp -o hmm.o
hmm.cpp: In function 'std::vector<std::vector<unsigned int> > viterbi_cpp(std::vector<arma::Mat<double> >, arma::rowvec, arma::mat)':
hmm.cpp:1079:29: warning: 'eT arma::subview_col<eT>::max(arma::uword&) const [with eT = double; arma::uword = unsigned int]' is deprecated: use .index_max() instead [-Wdeprecated-declarations]
 1079 |     lxis[i].col(Ts[i]-1).max(k_T); // (state mle @ T | xi) -> k_T
      |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:703,
                 from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32,
                 from hmm.cpp:1:
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/subview_meat.hpp:3887:1: note: declared here
 3887 | subview_col<eT>::max(uword& index_of_max_val) const
      | ^~~~~~~~~~~~~~~
hmm.cpp:1084:57: warning: 'elem_type arma::Base<elem_type, derived>::max(arma::uword&) const [with elem_type = double; derived = arma::eGlue<arma::subview_col<double>, arma::subview_col<double>, arma::eglue_plus>; arma::uword = unsigned int]' is deprecated: use .index_max() instead [-Wdeprecated-declarations]
 1084 |       (lxis[i].col(t-1) + lGamma.col(revseq.back())).max(k); // (state mle @ t-1 | xi, state @ t) -> k
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:676:
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/Base_meat.hpp:207:1: note: declared here
  207 | Base<elem_type,derived>::max(uword& index_of_max_val) const
      | ^~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c isSilent.cpp -o isSilent.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c notSilence.cpp -o notSilence.o
g++ -std=gnu++17 -shared -s -static-libgcc -o communication.dll tmp.def RcppExports.o hmm.o isSilent.o notSilence.o -fopenmp -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2026_01_07_09_26_23_3239/Rtmp0OLwZx/R.INSTALL1971871567b44/communication/src'
make[1]: Entering directory '/d/temp/2026_01_07_09_26_23_3239/Rtmp0OLwZx/R.INSTALL1971871567b44/communication/src'
make[1]: Leaving directory '/d/temp/2026_01_07_09_26_23_3239/Rtmp0OLwZx/R.INSTALL1971871567b44/communication/src'
installing to d:/Rcompile/CRANpkg/lib/4.6/00LOCK-communication/00new/communication/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'communication' as communication_0.1.zip
* DONE (communication)