* installing *source* package 'collpcm' ... ** package 'collpcm' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 13.3.0' make[1]: Entering directory '/d/temp/2024_12_11_01_50_01_2876/Rtmp02wJj6/R.INSTALL9f182d6473b/collpcm/src' gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c GaussianMixtureModel.c -o GaussianMixtureModel.o GaussianMixtureModel.c: In function 'update_allocations_with_ejection_move': GaussianMixtureModel.c:1338:36: warning: 'indexes' may be used uninitialized [-Wmaybe-uninitialized] 1338 | ii = indexes[i]; | ~~~^~~~~~~~~~~~ GaussianMixtureModel.c:1215:14: note: 'indexes' was declared here 1215 | int *indexes,*proposed_allocation,G = mixmod->G; | ^~~~~~~ GaussianMixtureModel.c:1339:68: warning: 'proposed_allocation' may be used uninitialized [-Wmaybe-uninitialized] 1339 | mixmod->z[ii] = proposed_allocation[i]; | ~~~~~~~~~~~~~~~~~~~^~~ GaussianMixtureModel.c:1215:23: note: 'proposed_allocation' was declared here 1215 | int *indexes,*proposed_allocation,G = mixmod->G; | ^~~~~~~~~~~~~~~~~~~ gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c NetworkLib.c -o NetworkLib.o NetworkLib.c: In function 'put_latentpositions': NetworkLib.c:73:80: warning: 'X' may be used uninitialized [-Wmaybe-uninitialized] 73 | for( k=0; k<d; k++ ) a += ( X[i][k] - X[j][k] ) * ( X[i][k] - X[j][k] ) ; | ~^~~ NetworkLib.c:43:18: note: 'X' was declared here 43 | double **X, *x, a; | ^ NetworkLib.c:43:22: warning: 'x' may be used uninitialized [-Wmaybe-uninitialized] 43 | double **X, *x, a; | ^ NetworkLib.c: In function 'dist_update': NetworkLib.c:258:39: warning: 'x' may be used uninitialized [-Wmaybe-uninitialized] 258 | dist[i][j] = x[i] - x[j] ; | ^ NetworkLib.c:229:22: note: 'x' was declared here 229 | double **X, *x, **dist = nw->dist, a ; | ^ gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cat.c -o cat.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c collapsed_lpcm.c -o collapsed_lpcm.o collapsed_lpcm.c:16:40: warning: missing braces around initializer [-Wmissing-braces] 16 | static const R_CMethodDef cMethods[] = { | ^ collapsed_lpcm.c: In function 'collapsed_lpcm': collapsed_lpcm.c:32:16: warning: variable 'tinit' set but not used [-Wunused-but-set-variable] 32 | double tinit, lps; | ^~~~~ gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nrutil.c -o nrutil.o gcc -shared -s -static-libgcc -o collpcm.dll tmp.def GaussianMixtureModel.o NetworkLib.o cat.o collapsed_lpcm.o nrutil.o -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR make[1]: Leaving directory '/d/temp/2024_12_11_01_50_01_2876/Rtmp02wJj6/R.INSTALL9f182d6473b/collpcm/src' make[1]: Entering directory '/d/temp/2024_12_11_01_50_01_2876/Rtmp02wJj6/R.INSTALL9f182d6473b/collpcm/src' make[1]: Leaving directory '/d/temp/2024_12_11_01_50_01_2876/Rtmp02wJj6/R.INSTALL9f182d6473b/collpcm/src' installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-collpcm/00new/collpcm/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'collpcm' as collpcm_1.4.zip * DONE (collpcm)