- using R Under development (unstable) (2024-07-17 r86903 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'clusteredinterference/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'clusteredinterference' version '1.0.1'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'clusteredinterference' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s] OK
- checking whether the package can be unloaded cleanly ... [0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s] OK
- checking loading without being on the library search path ... [0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [5s] OK
- checking Rd files ... [0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [0s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [113s] ERROR
Running 'testthat.R' [113s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(clusteredinterference)
>
> test_check("clusteredinterference")
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 34 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_integration.R:124:1'): Var mats [1]$Bread_mat are identical ──
baseline_effects$variance_matrices[[1]]$Bread_mat not equal to pfx$variance_matrices[[1]]$Bread_mat.
19/361 mismatches (average diff: 0.000237)
[1] 6.448 - 6.448 == -2.66e-07
[2] 255.964 - 255.964 == -7.59e-05
[3] 43.972 - 43.972 == -9.50e-06
[4] -0.906 - -0.906 == 2.66e-06
[20] 255.964 - 255.964 == -7.59e-05
[21] 11352.702 - 11352.705 == -3.15e-03
[22] 1748.779 - 1748.779 == -4.61e-04
[23] -44.914 - -44.914 == 8.10e-05
[38] -69.869 - -69.869 == -2.94e-06
...
── Failure ('test_variance_nuisance.R:11:1'): Test that old code and new code produce same target estimates ──
`AB_nuisance_list` not equal to `AB_nuisance_list_orig`.
Component "model": Component "A_mat": Mean relative difference: 2.838705e-07
Component "model": Component "B_list": Component "13": Mean relative difference: 4.631734e-07
── Failure ('test_variance_target.R:12:1'): Bread and meat of mu return as expected ──
`AB_target_list_mu` not equal to `AB_target_list_orig`.
Component "A_mat": Mean relative difference: 2.784186e-08
Component "B_list": Component 13: Mean relative difference: 1.245075e-07
── Failure ('test_variance_target.R:30:1'): Bread and meat of overall effect return as expected ──
`AB_target_list_OE` not equal to `AB_target_list_orig`.
Component "A_mat": Mean relative difference: 2.687584e-08
Component "B_list": Component 13: Mean relative difference: 7.214016e-08
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 34 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [100s] OK
- checking PDF version of manual ... [21s] OK
- checking HTML version of manual ... [1s] OK
- DONE
Status: 1 ERROR