* installing *source* package 'cheddar' ...
** this is package 'cheddar' version '0.1-639'
** package 'cheddar' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 14.3.0'
make[1]: Entering directory '/d/temp/2025_11_02_01_50_01_2710/Rtmp6VqGmm/R.INSTALL151c52c84139/cheddar/src'
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG     -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c anneal.cpp -o anneal.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG     -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c cheddar.cpp -o cheddar.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG     -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c shortest_paths.cpp -o shortest_paths.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG     -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c trophic_chains.cpp -o trophic_chains.o
trophic_chains.cpp: In instantiation of 'void TrophicChains<Visitor>::visit(Visitor&) const [with Visitor = CollectChainLengthsVisitor]':
trophic_chains.cpp:349:17:   required from here
  349 |     worker.visit(visitor);
      |     ~~~~~~~~~~~~^~~~~~~~~
trophic_chains.cpp:92:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   92 |     for(int n = 0; n < adjacency_.size(); ++n)
      |                    ~~^~~~~~~~~~~~~~~~~~~
trophic_chains.cpp:128:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  128 |           for(int j=0; j<adjacency_[m].size(); ++j)
      |                        ~^~~~~~~~~~~~~~~~~~~~~
trophic_chains.cpp: In instantiation of 'void TrophicChains<Visitor>::visit(Visitor&) const [with Visitor = PrintChainsVisitor]':
trophic_chains.cpp:412:17:   required from here
  412 |     worker.visit(visitor);
      |     ~~~~~~~~~~~~^~~~~~~~~
trophic_chains.cpp:92:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   92 |     for(int n = 0; n < adjacency_.size(); ++n)
      |                    ~~^~~~~~~~~~~~~~~~~~~
trophic_chains.cpp:128:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  128 |           for(int j=0; j<adjacency_[m].size(); ++j)
      |                        ~^~~~~~~~~~~~~~~~~~~~~
trophic_chains.cpp: In instantiation of 'void TrophicChains<Visitor>::visit(Visitor&) const [with Visitor = CollectChainsVisitor]':
trophic_chains.cpp:480:17:   required from here
  480 |     worker.visit(visitor);
      |     ~~~~~~~~~~~~^~~~~~~~~
trophic_chains.cpp:92:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   92 |     for(int n = 0; n < adjacency_.size(); ++n)
      |                    ~~^~~~~~~~~~~~~~~~~~~
trophic_chains.cpp:128:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  128 |           for(int j=0; j<adjacency_[m].size(); ++j)
      |                        ~^~~~~~~~~~~~~~~~~~~~~
trophic_chains.cpp: In instantiation of 'void TrophicChains<Visitor>::visit(Visitor&) const [with Visitor = ChainStatsVisitor]':
trophic_chains.cpp:552:17:   required from here
  552 |     worker.visit(visitor);
      |     ~~~~~~~~~~~~^~~~~~~~~
trophic_chains.cpp:92:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   92 |     for(int n = 0; n < adjacency_.size(); ++n)
      |                    ~~^~~~~~~~~~~~~~~~~~~
trophic_chains.cpp:128:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  128 |           for(int j=0; j<adjacency_[m].size(); ++j)
      |                        ~^~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o cheddar.dll tmp.def anneal.o cheddar.o shortest_paths.o trophic_chains.o -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_11_02_01_50_01_2710/Rtmp6VqGmm/R.INSTALL151c52c84139/cheddar/src'
make[1]: Entering directory '/d/temp/2025_11_02_01_50_01_2710/Rtmp6VqGmm/R.INSTALL151c52c84139/cheddar/src'
make[1]: Leaving directory '/d/temp/2025_11_02_01_50_01_2710/Rtmp6VqGmm/R.INSTALL151c52c84139/cheddar/src'
installing to d:/Rcompile/CRANpkg/lib/4.6/00LOCK-cheddar/00new/cheddar/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'cheddar' as cheddar_0.1-639.zip
* DONE (cheddar)