• using R Under development (unstable) (2026-03-09 r89583 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.3.0     GNU Fortran (GCC) 14.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8 * current time: 2026-03-10 08:50:20 UTC
• checking for file 'annotaR/DESCRIPTION' ... OK
• this is package 'annotaR' version '0.1.1'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'annotaR' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [6s] OK
• checking whether the package can be loaded with stated dependencies ... [6s] OK
• checking whether the package can be unloaded cleanly ... [6s] OK
• checking whether the namespace can be loaded with stated dependencies ... [6s] OK
• checking whether the namespace can be unloaded cleanly ... [6s] OK
• checking loading without being on the library search path ... [7s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [13s] OK
• checking Rd files ... [0s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [9s] OK
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [7s] OK   Running 'testthat.R' [7s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [83s] ERROR Error(s) in re-building vignettes: --- re-building 'annotaR-workflow.Rmd' using rmarkdown Quitting from annotaR-workflow.Rmd:45-56 [annotation] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/httr2_failure> Error in `req_perform()`: ! Failed to perform HTTP request. Caused by error in `curl::curl_fetch_memory()`: ! Timeout was reached [www.ensembl.org]: Operation timed out after 60010 milliseconds with 0 bytes received --- Backtrace:      ▆   1. ├─... %>% add_drug_links()   2. └─annotaR::add_drug_links(.)   3. ├─biomaRt::getBM(...)   4. │ └─biomaRt:::martCheck(mart)   5. └─biomaRt::useEnsembl("genes", "hsapiens_gene_ensembl")   6. └─biomaRt::useDataset(mart = mart, dataset = dataset, verbose = verbose)   7. └─biomaRt:::.getAttributes(mart, verbose = verbose)   8. └─biomaRt:::.getAttrFilt(mart = mart, verbose = verbose, type = "attributes")   9. └─biomaRt:::bmRequest(...)  10. └─httr2::req_perform(request) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'annotaR-workflow.Rmd' failed with diagnostics: Failed to perform HTTP request. Caused by error in `curl::curl_fetch_memory()`: ! Timeout was reached [www.ensembl.org]: Operation timed out after 60010 milliseconds with 0 bytes received --- failed re-building 'annotaR-workflow.Rmd' SUMMARY: processing the following file failed:   'annotaR-workflow.Rmd' Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [18s] OK
• checking HTML version of manual ... [1s] OK
• DONE

Status: 1 ERROR