Install log for 'RcppPlanc'

* installing *source* package 'RcppPlanc' ...
** this is package 'RcppPlanc' version '2.0.15'
** package 'RcppPlanc' successfully unpacked and MD5 sums checked
** using staged installation
-- Building for: Unix Makefiles
-- The C compiler identification is GNU 14.3.0
-- The CXX compiler identification is GNU 14.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: D:/rtools45/x86_64-w64-mingw32.static.posix/bin/gcc.exe - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: D:/rtools45/x86_64-w64-mingw32.static.posix/bin/g++.exe - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
This is libplanc 1.0.2 containing component nmflib 1.0.1
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Found R: D:/RCompile/recent/R/bin/x64/R.exe (found version "4.6.0")
-- Could NOT find MKL (missing: MKL_DIR)
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Found R_HighFive: D:/RCompile/CRANpkg/lib/4.6/HighFive
-- Found HDF5: hdf5-static (found version "1.12.1") found components: C
-- Performing Test HDF5_LINKS
-- Performing Test HDF5_LINKS - Success
-- Found R_Rcpp: D:/RCompile/CRANpkg/lib/4.6/Rcpp
-- Found R_RcppArmadillo: D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo
-- Found R_RcppProgress: D:/RCompile/CRANpkg/lib/4.6/RcppProgress
-- Performing Test UNSAFE_MATH
-- Performing Test UNSAFE_MATH - Success
-- Performing Test FINITE_MATH
-- Performing Test FINITE_MATH - Success
-- Performing Test TRAPPING_MATH
-- Performing Test TRAPPING_MATH - Success
-- Performing Test ERRNO_MATH
-- Performing Test ERRNO_MATH - Success
-- Performing Test UNSIGNED_ZERO
-- Performing Test UNSIGNED_ZERO - Success
-- Performing Test RECIPROCAL_MATH
-- Performing Test RECIPROCAL_MATH - Success
-- Performing Test ARCH_AVX
-- Performing Test ARCH_AVX - Success
-- Performing Test HAS_POPCNT
-- Performing Test HAS_POPCNT - Success
-- Looking for cblas.h
-- Looking for cblas.h - found
-- A cache variable, namely HWLOC_DIR, has been set to specify the install directory of HWLOC
-- Checking for one of the modules 'hwloc'
-- Looking for HWLOC - not found using PkgConfig.
   Perhaps you should add the directory containing hwloc.pc to
   the PKG_CONFIG_PATH environment variable.
-- Looking for HWLOC - PkgConfig not used
-- Looking for hwloc -- hwloc.h not found
-- Looking for hwloc -- lib hwloc not found
-- Could NOT find HWLOC (missing: HWLOC_LIBRARIES HWLOC_WORKS) 
-- Looking for dlfcn.h
-- Looking for dlfcn.h - found
-- NNLS_SOURCE_DIR =  D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/planc/nnls
-- NMF_SOURCE_DIR =  D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/planc/nmf
-- NMFLIB_COMMON =  D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/planc/common
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Configuring done (47.2s)
-- Generating done (0.2s)
-- Build files have been written to: D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/build
./configure.ucrt: line 36: _deps/highfive-src/include/highfive/bits/H5Friends.hpp: No such file or directory
gmake.exe[1]: Entering directory 'D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/build'
D:/rtools45/x86_64-w64-mingw32.static.posix/bin/cmake.exe -SD:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/planc -BD:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/build --check-build-system CMakeFiles/Makefile.cmake 0
D:/rtools45/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E cmake_progress_start D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/build/CMakeFiles D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/build//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/d/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/build'
make  -f CMakeFiles/utils.dir/build.make CMakeFiles/utils.dir/depend
make[3]: Entering directory '/d/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/build'
D:/rtools45/x86_64-w64-mingw32.static.posix/bin/cmake.exe -E cmake_depends "Unix Makefiles" D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/planc D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/planc D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/build D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/build D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/build/CMakeFiles/utils.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/d/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/build'
make  -f CMakeFiles/utils.dir/build.make CMakeFiles/utils.dir/build
make[3]: Entering directory '/d/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/build'
[  5%] Building CXX object CMakeFiles/utils.dir/common/utils.cpp.obj
D:/rtools45/x86_64-w64-mingw32.static.posix/bin/g++.exe  -std=gnu++20 -DUSING_R @CMakeFiles/utils.dir/includes_CXX.rsp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -O2 -g -DNDEBUG -std=gnu++17 -fno-keep-inline-dllexport -fopenmp -MD -MT CMakeFiles/utils.dir/common/utils.cpp.obj -MF CMakeFiles/utils.dir/common/utils.cpp.obj.d -o CMakeFiles/utils.dir/common/utils.cpp.obj -c D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/planc/common/utils.cpp
In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp.h:49,
                 from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:35,
                 from D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/planc/common/config.h:32,
                 from D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/planc/common/utils.h:2,
                 from D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/planc/common/utils.hpp:6,
                 from D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/planc/common/utils.cpp:4:
D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/Function.h: In constructor 'Rcpp::Function_Impl<StoragePolicy>::Function_Impl(const std::string&, const std::string&)':
D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/Function.h:75:65: error: 'R_NamespaceRegistry' was not declared in this scope
   75 |             Shield<SEXP> env(R_getVarEx(Rf_install(ns.c_str()), R_NamespaceRegistry, FALSE, R_UnboundValue));
      |                                                                 ^~~~~~~~~~~~~~~~~~~
D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/planc/common/utils.hpp: In instantiation of 'void makeSparse(double, T*) [with T = arma::Mat<double>]':
D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/planc/common/utils.cpp:69:30:   required from here
   69 |         makeSparse<arma::mat>(sparsity, &W);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/planc/common/utils.hpp:81:23: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
   81 |     for (int j = 0; j < X->n_cols; j++) {
      |                     ~~^~~~~~~~~~~
make[3]: *** [CMakeFiles/utils.dir/build.make:83: CMakeFiles/utils.dir/common/utils.cpp.obj] Error 1
make[3]: Leaving directory '/d/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/build'
make[2]: *** [CMakeFiles/Makefile2:121: CMakeFiles/utils.dir/all] Error 2
make[2]: Leaving directory '/d/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/build'
gmake.exe[1]: *** [Makefile:139: all] Error 2
gmake.exe[1]: Leaving directory 'D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/build'
-- Install configuration: "RelWithDebInfo"
CMake Error at cmake_install.cmake:66 (file):
  file INSTALL cannot find
  "D:/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src/build/nmf/libnmflib.dll":
  No error.


** libs
specified C++17
using C++ compiler: 'g++.exe (GCC) 14.3.0'
using C++17
make[1]: Entering directory '/d/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src'
g++  -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -Iplanc/common -Iplanc/nmf -Iplanc/nnls -Ibuild/_deps/highfive-src/include -Ibuild/nmf -DUSING_R -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -D_GNU_SOURCE -D_POSIX_C_SOURCE=200809L -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppProgress/include' -I'D:/RCompile/CRANpkg/lib/4.6/HighFive/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp.h:49,
                 from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:35,
                 from ../inst/include/RcppPlanc.h:5,
                 from RcppExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/Function.h: In constructor 'Rcpp::Function_Impl<StoragePolicy>::Function_Impl(const std::string&, const std::string&)':
D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/Function.h:75:65: error: 'R_NamespaceRegistry' was not declared in this scope
   75 |             Shield<SEXP> env(R_getVarEx(Rf_install(ns.c_str()), R_NamespaceRegistry, FALSE, R_UnboundValue));
      |                                                                 ^~~~~~~~~~~~~~~~~~~
make[1]: *** [D:/RCompile/recent/R/etc/x64/Makeconf:304: RcppExports.o] Error 1
make[1]: Leaving directory '/d/temp/2026_04_17_01_50_00_1722/RtmpS0jz8t/R.INSTALL77402d595d2f/RcppPlanc/src'
ERROR: compilation failed for package 'RcppPlanc'
* removing 'd:/Rcompile/CRANpkg/lib/4.6/RcppPlanc'
* restoring previous 'd:/Rcompile/CRANpkg/lib/4.6/RcppPlanc'