- using R Under development (unstable) (2026-09-16 r90549 ucrt)
- using platform: x86_64-w64-mingw32
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gcc.exe (GCC) 14.3.0
GNU Fortran (GCC) 14.3.0
- running under: Windows Server 2022 x64 (build 20348)
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* current time: 2026-09-17 10:37:36 UTC
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- this is package 'QTL.gCIMapping' version '3.4'
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See the install log for details.
- used C++ compiler: 'g++.exe (GCC) 14.3.0'
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installed size is 5.0Mb
sub-directories of 1Mb or more:
extdata 3.0Mb
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- checking whether the package can be loaded ... [2s] OK
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- checking R code for possible problems ... [28s] OK
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- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compiled code ... OK
- checking examples ... [17s] ERROR
Running examples in 'QTL.gCIMapping-Ex.R' failed
The error most likely occurred in:
> ### Name: ZhouMethod
> ### Title: The second step of Zhou method for multiple environments
> ### Aliases: ZhouMethod
>
> ### ** Examples
>
> data(F2data)
> readraw<-Readdata(file=F2data,fileFormat="GCIM",
+ method="GCIM-QEI",filecov=NULL,
+ MCIMmap=NULL,MultiEnv=TRUE)
> DoResult<-Dodata(fileFormat="GCIM",
+ Population="F2",method="GCIM-QEI",
+ Model="Random",readraw,MultiEnv=TRUE)
> ZhouMatrices<-ZhouF(pheRaw=DoResult$pheRaw,
+ genRaw=DoResult$genRaw,mapRaw1=DoResult$mapRaw1,
+ WalkSpeed=1,CriLOD=3,dir=tempdir())
--Read the following data:
49 individuals
100 markers
4 phenotypes
--Cross type: f2
> OutputZhou<-ZhouMethod(Model="Random",
+ pheRaw=DoResult$pheRaw,genRaw=DoResult$genRaw,
+ mapRaw=ZhouMatrices$mapRaw,CriLOD=3,NUM=1,
+ EnvNum=DoResult$EnvNum,yygg=DoResult$yygg1,
+ genoname=ZhouMatrices$genoname,
+ Ax0=ZhouMatrices$Ax0,Hx0=ZhouMatrices$Hx0,
+ Bx0=ZhouMatrices$Bx0,Ax=ZhouMatrices$Ax,
+ Hx=ZhouMatrices$Hx,Bx=ZhouMatrices$Bx,
+ dir=tempdir(),CriDis=5,CLO=2)
Error in serverSocket(port = port) :
creation of server socket failed: port 11667 cannot be opened
Calls: ZhouMethod ... single_locus_model -> makeCluster -> makePSOCKcluster -> serverSocket
Execution halted
- checking PDF version of manual ... [19s] OK
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- DONE
Status: 1 ERROR