• using R Under development (unstable) (2025-08-09 r88550 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.2.0     GNU Fortran (GCC) 14.2.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'ProjectTemplate/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'ProjectTemplate' version '0.11.0'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'ProjectTemplate' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s] OK
• checking whether the package can be unloaded cleanly ... [1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s] OK
• checking loading without being on the library search path ... [1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s] OK
• checking Rd files ... [2s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [2s] OK
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [108s] ERROR   Running 'run-all.R' [54s]   Running 'testthat.R' [54s] Running the tests in 'tests/run-all.R' failed. Complete output:   > library(testthat)   >   > test_check("ProjectTemplate")   Loading required package: ProjectTemplate   Loading required package: digest   Loading required package: tibble   Project name: test_project28d844c67e24   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project28d846e80268b   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project28d846e71311   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Configuration for project: test_project28d846e71311   version 0.11.0   data_loading TRUE   data_loading_header TRUE   data_ignore   cache_loading TRUE   recursive_loading FALSE   munging TRUE   logging FALSE   logging_level INFO   load_libraries FALSE   libraries reshape2, plyr, tidyverse, stringr, lubridate   as_factors FALSE   tables_type tibble   attach_internal_libraries FALSE   cache_loaded_data TRUE   sticky_variables NONE   underscore_variables TRUE   cache_file_format RData   dummy 999   Configuration for project: test_project28d846e71311   version 0.11.0   data_loading TRUE   data_loading_header TRUE   data_ignore   cache_loading TRUE   recursive_loading FALSE   munging TRUE   logging FALSE   logging_level INFO   load_libraries FALSE   libraries reshape2, plyr, tidyverse, stringr, lubridate   as_factors FALSE   tables_type tibble   attach_internal_libraries FALSE   cache_loaded_data TRUE   sticky_variables NONE   underscore_variables TRUE   cache_file_format RData      Additional custom config present for this project:   Objects to clear from memory: config helper.function project.info   Project name: test_project28d8441e47def   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: foo.reader.R    Running helper script: helpers.R   Autoloading data    Loading data set: example     Creating cache entry from global environment: example   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Following objects not in memory:   Objects to clear from memory: xxxx   Project name: test_project28d8462966756   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: helper.function project.info   Clearing cache for project: test_project28d8462966756   Clearing cache for project: test_project28d84243aa31   Objects to clear from memory: xxx   Project name: test_project28d84243aa31   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R     Creating cache entry from CODE: xxxx   Objects to clear from memory: config project.info   Objects to clear from memory: project.info   Objects to clear from memory: yyy   Following objects not in memory: xxx   Following objects not in memory: xxx   Variables not cleared: config   No objects to clear   Objects to clear from memory: .yyy helper.function project.info   Project name: test_project28d848854ab7   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project28d848854ab7   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Configuration for project: test_project28d846c1523e0   Project name: test_project28d8440845fa0   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project28d8433bf20a4   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R      == Testing 1.R =================================================================      [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!      == Testing 1.R =================================================================      [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!   Directory: test_project28d842b36674 is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Directory: test_project28d842b36674 is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Directory: test_project228d8474325cbb is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Objects to clear from memory: config helper.function project.info   No objects to clear   Objects to clear from memory: config file28d84ea1787c helper.function project.info     Creating cache entry from CODE: test_data   Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Please change to correct directory and re-run load.project()      Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run clear.cache() again.      Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run cache() again.      Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run reload.project() again.      Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run test.project() again.      Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run stub.tests() again.      Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Please change to correct directory and re-run project.config()      Project name: test_project28d8468ad2ade   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading data set: Thumbs   Loading required namespace: RSQLite     Creating cache entry from global environment: var_to_cache   Loading required package: data.table        01-test_data.py start   01-test_data.py finish        02-test_data.py start   ['1', '20']   ['2', '30']   ['3', '40']   Python data exists in the environment   y   02-test_data.py finish   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.    version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format      There is a new config item called cache_loaded_data which auto-caches data   after it has been loaded from the data directory. This has been switched   off for this project in case it breaks your scripts. However you can switch   it on manually by editing global.dcf      data_tables has been renamed tables_type. It can take the value 'tibble',   'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be   set to 'data_table', otherwise the default 'data_frame' will be used. if you   wish a different default set it manually by editing global.dcf. Future new   projects will use 'tibble' by default.   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.    data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format      There is a new config item called cache_loaded_data which auto-caches data   after it has been loaded from the data directory. This has been switched   off for this project in case it breaks your scripts. However you can switch   it on manually by editing global.dcf      data_tables has been renamed tables_type. It can take the value 'tibble',   'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be   set to 'data_table', otherwise the default 'data_frame' will be used. if you   wish a different default set it manually by editing global.dcf. Future new   projects will use 'tibble' by default.   Migrating project configuration   [1] FALSE   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    cache_loaded_data   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file contained unused entries which have been   removed. The unused entries are:   Migrating project configuration   [1] FALSE   Migrating project configuration   [1] TRUE   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    tables_type   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    tables_type   Project name: test_project28d847f335db3   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: .Random.seed config helper.function project.info   Project name: test_project28d847206196f   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project28d847206196f   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project28d843b162ab2   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project28d843b162ab2   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project28d841e074156   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project28d841e074156   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project28d8426278e7   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project28d84a403e78   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project28d84a403e78   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Objects to clear from memory: config helper.function project.info   Project name: test_project28d8454b367ba   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project28d8454b367ba   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project28d84331f6160   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project28d84331f6160   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Objects to clear from memory: config helper.function project.info   Project name: test_project28d8487165c5   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project28d8487165c5   Loading project configuration   Objects to clear from memory: config helper.function project.info   Project name: test_project28d846f0818a2   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project28d846f0818a2   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Loading required package: qs   qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103     Creating cache entry from global environment: cache.qs     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    cache_loaded_data     Loading table: example_30a     Loading table: example_30b     Loading table: example_31a     Loading table: example_31b     Loading table: example_28   re-encoding from CP1252   re-encoding from CP1252   Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22   Objects to clear from memory: config helper.function project.info   Items in cache will not be cleared   Use reload.project(reset=TRUE) to clear cache also   Objects to clear from memory: helper.function project.info z   Reloading Project ...   Project name: test_project28d842a843f74   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading cached data set: z   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info x y z   Project name: test_project28d84e6b3a6a   Loading project configuration   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project28d8448637b54   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project28d847d1f6a6   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading data set: file_not_in_full_template    Translating data.frame to tibble: file_not_in_full_template     Creating cache entry from global environment: file_not_in_full_template   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   [1] FALSE   [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──   `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.      [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]   Error: Test failures   Execution halted Running the tests in 'tests/testthat.R' failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(ProjectTemplate)   Loading required package: digest   Loading required package: tibble   >   > test_check("ProjectTemplate")   Project name: test_project16334149d3cc9   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project1633415a15c8c   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project16334187113fa   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Configuration for project: test_project16334187113fa   version 0.11.0   data_loading TRUE   data_loading_header TRUE   data_ignore   cache_loading TRUE   recursive_loading FALSE   munging TRUE   logging FALSE   logging_level INFO   load_libraries FALSE   libraries reshape2, plyr, tidyverse, stringr, lubridate   as_factors FALSE   tables_type tibble   attach_internal_libraries FALSE   cache_loaded_data TRUE   sticky_variables NONE   underscore_variables TRUE   cache_file_format RData   dummy 999   Configuration for project: test_project16334187113fa   version 0.11.0   data_loading TRUE   data_loading_header TRUE   data_ignore   cache_loading TRUE   recursive_loading FALSE   munging TRUE   logging FALSE   logging_level INFO   load_libraries FALSE   libraries reshape2, plyr, tidyverse, stringr, lubridate   as_factors FALSE   tables_type tibble   attach_internal_libraries FALSE   cache_loaded_data TRUE   sticky_variables NONE   underscore_variables TRUE   cache_file_format RData      Additional custom config present for this project:   Objects to clear from memory: config helper.function project.info   Project name: test_project1633441234a5d   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: foo.reader.R    Running helper script: helpers.R   Autoloading data    Loading data set: example     Creating cache entry from global environment: example   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Following objects not in memory:   Objects to clear from memory: xxxx   Project name: test_project163344ca44f1a   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: helper.function project.info   Clearing cache for project: test_project163344ca44f1a   Clearing cache for project: test_project16334474915a9   Objects to clear from memory: xxx   Project name: test_project16334474915a9   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R     Creating cache entry from CODE: xxxx   Objects to clear from memory: config project.info   Objects to clear from memory: project.info   Objects to clear from memory: yyy   Following objects not in memory: xxx   Following objects not in memory: xxx   Variables not cleared: config   No objects to clear   Objects to clear from memory: .yyy helper.function project.info   Project name: test_project16334513272c9   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project16334513272c9   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Configuration for project: test_project1633412bb48d5   Project name: test_project163341f8a629e   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project163343efdee1   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R      == Testing 1.R =================================================================      [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!      == Testing 1.R =================================================================      [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]   [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!   Directory: test_project163348871e35 is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Directory: test_project163348871e35 is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Directory: test_project216334515b2753 is a ProjectTemplate directory   Cannot create a new project inside an existing one   Please change to another directory and re-run create.project()   Objects to clear from memory: config helper.function project.info   No objects to clear   Objects to clear from memory: config file16334156832aa helper.function project.info     Creating cache entry from CODE: test_data   Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Please change to correct directory and re-run load.project()      Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run clear.cache() again.      Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run cache() again.      Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run reload.project() again.      Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run test.project() again.      Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Change to a valid ProjectTemplate directory and run stub.tests() again.      Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.   Please change to correct directory and re-run project.config()      Project name: test_project163346bc72b48   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading data set: Thumbs   Loading required namespace: RSQLite     Creating cache entry from global environment: var_to_cache   Loading required package: data.table        01-test_data.py start   01-test_data.py finish        02-test_data.py start   ['1', '20']   ['2', '30']   ['3', '40']   Python data exists in the environment   y   02-test_data.py finish   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.    version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format      There is a new config item called cache_loaded_data which auto-caches data   after it has been loaded from the data directory. This has been switched   off for this project in case it breaks your scripts. However you can switch   it on manually by editing global.dcf      data_tables has been renamed tables_type. It can take the value 'tibble',   'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be   set to 'data_table', otherwise the default 'data_frame' will be used. if you   wish a different default set it manually by editing global.dcf. Future new   projects will use 'tibble' by default.   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.    data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format      There is a new config item called cache_loaded_data which auto-caches data   after it has been loaded from the data directory. This has been switched   off for this project in case it breaks your scripts. However you can switch   it on manually by editing global.dcf      data_tables has been renamed tables_type. It can take the value 'tibble',   'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be   set to 'data_table', otherwise the default 'data_frame' will be used. if you   wish a different default set it manually by editing global.dcf. Future new   projects will use 'tibble' by default.   Migrating project configuration   [1] FALSE   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    cache_loaded_data   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file contained unused entries which have been   removed. The unused entries are:   Migrating project configuration   [1] FALSE   Migrating project configuration   [1] TRUE   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    tables_type   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    tables_type   Project name: test_project1633418ef43ef   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: .Random.seed config helper.function project.info   Project name: test_project1633442b844c4   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project1633442b844c4   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project16334136b672d   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project16334136b672d   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project1633452fe44ed   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project1633452fe44ed   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project16334432677d2   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project1633411176448   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project1633411176448   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Objects to clear from memory: config helper.function project.info   Project name: test_project1633478dc5431   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project1633478dc5431   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Project name: test_project1633437a69d9   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project1633437a69d9   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Objects to clear from memory: config helper.function project.info   Project name: test_project163345f7c5845   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project163345f7c5845   Loading project configuration   Objects to clear from memory: config helper.function project.info   Project name: test_project163343b0b2f71   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project163343b0b2f71   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info   Loading required package: qs   qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103     Creating cache entry from global environment: cache.qs     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx     Creating cache entry from global environment: xxxx   Migrating project configuration   [1] FALSE   Your existing project configuration in globals.dcf does not contain up to   date configuration settings in this version 0.11.0 of ProjectTemplate. They will   be added automatically during migration, but you should review afterward.   Your config.dcf file was missing entries and defaults   have been used. The missing entries are:    cache_loaded_data     Loading table: example_30a     Loading table: example_30b     Loading table: example_31a     Loading table: example_31b     Loading table: example_28   re-encoding from CP1252   re-encoding from CP1252   Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22   Objects to clear from memory: config helper.function project.info   Items in cache will not be cleared   Use reload.project(reset=TRUE) to clear cache also   Objects to clear from memory: helper.function project.info z   Reloading Project ...   Project name: test_project1633455eb156a   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading cached data set: z   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Objects to clear from memory: config helper.function project.info x y z   Project name: test_project163342bbe2e0f   Loading project configuration   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project1633468f863af   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   Project name: test_project1633432ea6400   Loading project configuration   Autoloading helper functions    Running helper script: globals.R    Running helper script: helpers.R   Autoloading data    Loading data set: file_not_in_full_template    Translating data.frame to tibble: file_not_in_full_template     Creating cache entry from global environment: file_not_in_full_template   Munging data    Running preprocessing script: 01-A.R    Sourcing R script: 01-A.R   [1] FALSE   [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──   `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.      [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]   Error: Test failures   Execution halted
• checking PDF version of manual ... [22s] OK
• checking HTML version of manual ... [10s] OK
• DONE

Status: 1 ERROR