• using R Under development (unstable) (2026-06-06 r90114 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.3.0     GNU Fortran (GCC) 14.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8 * current time: 2026-06-07 16:55:55 UTC
• checking for file 'ProbeDeveloper/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'ProbeDeveloper' version '1.1.1'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'ProbeDeveloper' can be installed ... WARNING Found the following significant warnings:   Note: possible error in 'tm_calculate(SubSeqObj, ': unused arguments (salt_corr_method = saltcorr, formamide_value_unit = list(value = fmd, unit = fmdmethod)) See the install log for details. Information on the location(s) of code generating the 'Note's can be obtained by re-running with environment variable R_KEEP_PKG_SOURCE set to 'yes'.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [21s] OK
• checking whether the package can be loaded with stated dependencies ... [22s] OK
• checking whether the package can be unloaded cleanly ... [22s] OK
• checking whether the namespace can be loaded with stated dependencies ... [20s] OK
• checking whether the namespace can be unloaded cleanly ... [20s] OK
• checking loading without being on the library search path ... [20s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [44s] NOTE ProbeMake: possible error in tm_calculate(SubSeqObj, method = TmMethod,   ambiguous = FALSE, complement_seq = NULL, shift = 0, nn_table =   nn_table, tmm_table = tmm_table, imm_table = imm_table, de_table =   de_table, dnac_high = dnac1, dnac_low = dnac2, self_comp = FALSE,   variant = variant, Na = Na, K = K, Tris = Tris, Mg = Mg, dNTPs =   dNTPs, salt_corr_method = saltcorr, dmso_factor = DMSOfactor,   formamide_factor = fmdfactor, DMSO = DMSO, formamide_value_unit =   list(value = fmd, unit = fmdmethod), mismatch = TRUE): unused   arguments (salt_corr_method = saltcorr, formamide_value_unit =   list(value = fmd, unit = fmdmethod))
• checking Rd files ... [0s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... [3s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [26s] OK
• checking PDF version of manual ... [19s] OK
• checking HTML version of manual ... [1s] OK
• DONE

Status: 1 WARNING, 1 NOTE