* installing *source* package 'Morpho' ...
** package 'Morpho' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.3.0'
using C++ compiler: 'g++.exe (GCC) 12.3.0'
make[1]: Entering directory '/d/temp/Rtmpk59KWa/R.INSTALL2eac2abe4143/Morpho/src'
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c CVAdists.cpp -o CVAdists.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c CubeStuff.cpp -o CubeStuff.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ang_calc.cpp -o ang_calc.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/armadillo:26,
                 from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
                 from doozers.h:7,
                 from ang_calc.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed'
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |                                                                                      ^
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead'
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |                                                                           ^
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details'
  329 |   #pragma message ("INFO: see the documentation for details")
      |                                                             ^
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c armaGinvCpp.cpp -o armaGinvCpp.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c asymPerm.cpp -o asymPerm.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c barycenter.cpp -o barycenter.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c covPCA.cpp -o covPCA.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/armadillo:26,
                 from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
                 from covPCA.h:5,
                 from covPCA.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed'
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |                                                                                      ^
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead'
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |                                                                           ^
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details'
  329 |   #pragma message ("INFO: see the documentation for details")
      |                                                             ^
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c createL.cpp -o createL.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c doozers.cpp -o doozers.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c edgePlane.cpp -o edgePlane.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/armadillo:26,
                 from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
                 from doozers.h:7,
                 from edgePlane.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed'
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |                                                                                      ^
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead'
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |                                                                           ^
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details'
  329 |   #pragma message ("INFO: see the documentation for details")
      |                                                             ^
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c face_zero.cpp -o face_zero.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c fastSubsetMeans.cpp -o fastSubsetMeans.o
fastSubsetMeans.cpp: In function 'SEXPREC* fastSubsetMeans(SEXP, SEXP, SEXP, SEXP)':
fastSubsetMeans.cpp:22:25: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
   22 |       for (int j = 0; j < tmpinds.size();j++)
      |                       ~~^~~~~~~~~~~~~~~~
gcc  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c init.c -o init.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c meshres.cpp -o meshres.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c permudistArma.cpp -o permudistArma.o
permudistArma.cpp: In function 'SEXPREC* permudistArma(SEXP, SEXP, SEXP, SEXP)':
permudistArma.cpp:9:10: warning: unused variable 'usemedian' [-Wunused-variable]
    9 |     bool usemedian = Rcpp::as<bool>(usemedian_);
      |          ^~~~~~~~~
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c points2mesh.cpp -o points2mesh.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c tpsfx.cpp -o tpsfx.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c tweakU.cpp -o tweakU.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c updateNormals.cpp -o updateNormals.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/armadillo:26,
                 from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
                 from doozers.h:7,
                 from updateNormals.h:4,
                 from updateNormals.cpp:1:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed'
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |                                                                                      ^
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead'
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |                                                                           ^
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details'
  329 |   #pragma message ("INFO: see the documentation for details")
      |                                                             ^
g++ -std=gnu++17 -shared -s -static-libgcc -o Morpho.dll tmp.def CVAdists.o CubeStuff.o ang_calc.o armaGinvCpp.o asymPerm.o barycenter.o covPCA.o createL.o doozers.o edgePlane.o face_zero.o fastSubsetMeans.o init.o meshres.o permudistArma.o points2mesh.o tpsfx.o tweakU.o updateNormals.o -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -fopenmp -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/Rtmpk59KWa/R.INSTALL2eac2abe4143/Morpho/src'
make[1]: Entering directory '/d/temp/Rtmpk59KWa/R.INSTALL2eac2abe4143/Morpho/src'
make[1]: Leaving directory '/d/temp/Rtmpk59KWa/R.INSTALL2eac2abe4143/Morpho/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-Morpho/00new/Morpho/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'Morpho' as Morpho_2.12.zip
* DONE (Morpho)