• using R Under development (unstable) (2025-06-11 r88304 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.2.0     GNU Fortran (GCC) 14.2.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'MetaComp/DESCRIPTION' ... OK
• this is package 'MetaComp' version '1.1.2'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'MetaComp' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s] OK
• checking whether the package can be unloaded cleanly ... [1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s] OK
• checking loading without being on the library search path ... [1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s] OK
• checking Rd files ... [0s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking LazyData ... INFO   'LazyData' is specified without a 'data' directory
• checking examples ... [2s] ERROR Running examples in 'MetaComp-Ex.R' failed The error most likely occurred in: > ### Name: plot_edge_assignment > ### Title: Generates a single column ggplot for a taxonomic assignment > ### table and also outputs a PDF. > ### Aliases: plot_edge_assignment > > ### ** Examples > > pa_fpath <- system.file("extdata", "HMP_even//allReads-pangia.list.txt", package="MetaComp") > pangia_assignment = load_edge_assignment(pa_fpath, type = "pangia") > > plot_edge_assignment(pangia_assignment, "phylum", "Pangia", "HMP Even", + file.path(tempdir(), "assignment.pdf")) Error in Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg, :   Graphics API version mismatch Calls: plot_edge_assignment -> <Anonymous> -> Cairo Execution halted
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [6s] ERROR   Running 'testthat.R' [6s] Running the tests in 'tests/testthat.R' failed. Complete output:   > library(testthat)   > library(MetaComp)   >   > test_check("MetaComp")   [1] "gottcha"   [1] "kraken"   [ FAIL 14 | WARN 7 | SKIP 0 | PASS 114 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_pipeline.R:28:1'): (code run outside of `test_that()`) ─────────   Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,       units = "in", title = title, ...)`: Graphics API version mismatch   Backtrace:       ▆    1. └─MetaComp::plot_merged_assignment(...) at test_pipeline.R:28:1    2. └─Cairo::CairoPDF(...)    3. └─Cairo::Cairo(...)   ── Error ('test_plot_bwa_assignment.R:18:1'): (code run outside of `test_that()`) ──   Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,       units = "in", title = title, ...)`: Graphics API version mismatch   Backtrace:       ▆    1. └─MetaComp::plot_edge_assignment(...) at test_plot_bwa_assignment.R:18:1    2. └─Cairo::CairoPDF(...)    3. └─Cairo::Cairo(...)   ── Error ('test_plot_diamond_assignment.R:18:1'): (code run outside of `test_that()`) ──   Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,       units = "in", title = title, ...)`: Graphics API version mismatch   Backtrace:       ▆    1. └─MetaComp::plot_edge_assignment(...) at test_plot_diamond_assignment.R:18:1    2. └─Cairo::CairoPDF(...)    3. └─Cairo::Cairo(...)   ── Error ('test_plot_gottcha_assignment.R:18:1'): (code run outside of `test_that()`) ──   Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,       units = "in", title = title, ...)`: Graphics API version mismatch   Backtrace:       ▆    1. └─MetaComp::plot_edge_assignment(...) at test_plot_gottcha_assignment.R:18:1    2. └─Cairo::CairoPDF(...)    3. └─Cairo::Cairo(...)   ── Error ('test_plot_kraken_assignment.R:18:1'): (code run outside of `test_that()`) ──   Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,       units = "in", title = title, ...)`: Graphics API version mismatch   Backtrace:       ▆    1. └─MetaComp::plot_edge_assignment(...) at test_plot_kraken_assignment.R:18:1    2. └─Cairo::CairoPDF(...)    3. └─Cairo::Cairo(...)   ── Error ('test_plot_merged_assignment_b.R:73:1'): (code run outside of `test_that()`) ──   Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,       units = "in", title = title, ...)`: Graphics API version mismatch   Backtrace:       ▆    1. └─MetaComp::plot_merged_assignment(...) at test_plot_merged_assignment_b.R:73:1    2. └─Cairo::CairoPDF(...)    3. └─Cairo::Cairo(...)   ── Error ('test_plot_merged_assignment_d.R:73:1'): (code run outside of `test_that()`) ──   Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,       units = "in", title = title, ...)`: Graphics API version mismatch   Backtrace:       ▆    1. └─MetaComp::plot_merged_assignment(...) at test_plot_merged_assignment_d.R:73:1    2. └─Cairo::CairoPDF(...)    3. └─Cairo::Cairo(...)   ── Error ('test_plot_merged_assignment_g.R:71:1'): (code run outside of `test_that()`) ──   Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,       units = "in", title = title, ...)`: Graphics API version mismatch   Backtrace:       ▆    1. └─MetaComp::plot_merged_assignment(...) at test_plot_merged_assignment_g.R:71:1    2. └─Cairo::CairoPDF(...)    3. └─Cairo::Cairo(...)   ── Error ('test_plot_merged_assignment_g2.R:71:1'): (code run outside of `test_that()`) ──   Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,       units = "in", title = title, ...)`: Graphics API version mismatch   Backtrace:       ▆    1. └─MetaComp::plot_merged_assignment(...) at test_plot_merged_assignment_g2.R:71:1    2. └─Cairo::CairoPDF(...)    3. └─Cairo::Cairo(...)   ── Error ('test_plot_merged_assignment_k.R:73:1'): (code run outside of `test_that()`) ──   Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,       units = "in", title = title, ...)`: Graphics API version mismatch   Backtrace:       ▆    1. └─MetaComp::plot_merged_assignment(...) at test_plot_merged_assignment_k.R:73:1    2. └─Cairo::CairoPDF(...)    3. └─Cairo::Cairo(...)   ── Error ('test_plot_merged_assignment_m.R:73:1'): (code run outside of `test_that()`) ──   Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,       units = "in", title = title, ...)`: Graphics API version mismatch   Backtrace:       ▆    1. └─MetaComp::plot_merged_assignment(...) at test_plot_merged_assignment_m.R:73:1    2. └─Cairo::CairoPDF(...)    3. └─Cairo::Cairo(...)   ── Error ('test_plot_merged_assignment_p.R:74:1'): (code run outside of `test_that()`) ──   Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,       units = "in", title = title, ...)`: Graphics API version mismatch   Backtrace:       ▆    1. └─MetaComp::plot_merged_assignment(...) at test_plot_merged_assignment_p.R:74:1    2. └─Cairo::CairoPDF(...)    3. └─Cairo::Cairo(...)   ── Error ('test_plot_metaphlan_assignment.R:18:1'): (code run outside of `test_that()`) ──   Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,       units = "in", title = title, ...)`: Graphics API version mismatch   Backtrace:       ▆    1. └─MetaComp::plot_edge_assignment(...) at test_plot_metaphlan_assignment.R:18:1    2. └─Cairo::CairoPDF(...)    3. └─Cairo::Cairo(...)   ── Error ('test_plot_pangia_assignment.R:18:1'): (code run outside of `test_that()`) ──   Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,       units = "in", title = title, ...)`: Graphics API version mismatch   Backtrace:       ▆    1. └─MetaComp::plot_edge_assignment(...) at test_plot_pangia_assignment.R:18:1    2. └─Cairo::CairoPDF(...)    3. └─Cairo::Cairo(...)      [ FAIL 14 | WARN 7 | SKIP 0 | PASS 114 ]   Error: Test failures   Execution halted
• checking PDF version of manual ... [19s] OK
• checking HTML version of manual ... [1s] OK
• DONE

Status: 2 ERRORs