- using R Under development (unstable) (2024-10-01 r87205 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'KinMixLite/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'KinMixLite' version '2.1.0'
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'KinMixLite' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s] OK
- checking whether the package can be loaded with stated dependencies ... [3s] OK
- checking whether the package can be unloaded cleanly ... [3s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s] OK
- checking whether the namespace can be unloaded cleanly ... [3s] OK
- checking loading without being on the library search path ... [3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [12s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
convertIBD.Rd: pedtools
logL.UKX.Rd: logL.UK
logLX.Rd: logL
mixMLX.Rd: mixML
pedigreeIBD.Rd: pedtools
wlr.Rd: map.genotypes
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [0s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ...
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
>
> ### ** Examples
>
> data(test2data)
>
>
>
> cleanEx()
> nameEx("wlr")
> ### * wlr
>
> flush(stderr()); flush(stdout())
>
> ### Name: wlr
> ### Title: Computes paternity LR using WLR method
> ### Aliases: wlr
>
> ### ** Examples
>
> data(test2data)
> data(NGMDyes)
>
> # set threshold C
> C<-0.001
>
> pars<-mixpar(rho=list(2),eta=list(100),xi=list(0.1),phi=list(c(U1=0.9,U2=0.1)))
>
> mixWLR<-DNAmixture(list(epg),k=2,C=list(C),database=db,dyes=list(NGMDyes))
> setPeakInfo(mixWLR,pars)
> sepWLR<-map.genotypes(mixWLR,type="all",pmin=0.0001,U=1)
======== End of example output (where/before crash/hang up occured ?) ========