• using R Under development (unstable) (2025-09-03 r88788 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.2.0     GNU Fortran (GCC) 14.2.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'JointFPM/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'JointFPM' version '1.3.0'
• package encoding: UTF-8
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• checking whether package 'JointFPM' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
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• checking R code for possible problems ... [8s] OK
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• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
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• checking examples ... [5s] ERROR Running examples in 'JointFPM-Ex.R' failed The error most likely occurred in: > ### Name: test_dfs_JointFPM > ### Title: Tests DFs for JointFPMs. > ### Aliases: test_dfs_JointFPM > > ### ** Examples > > # Test different dfs > test_dfs_JointFPM(Surv(time = start, + time2 = stop, + event = event, + type = 'counting') ~ 1, + re_model = ~ pyridoxine + thiotepa, + ce_model = ~ pyridoxine + thiotepa, + re_indicator = "re", + ce_indicator = "ce", + dfs_ce = 1:3, + dfs_re = 2, + tvc_ce_terms = list(thiotepa = 1:2), + tvc_re_terms = list(pyridoxine = 2), + cluster = "id", + data = bladder1_stacked) Error in UseMethod("logLik") :   no applicable method for 'logLik' applied to an object of class "c('stpm2', 'mle2')" Calls: test_dfs_JointFPM ... cbind -> data.frame -> <Anonymous> -> AIC.default -> ll Execution halted
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [48s] ERROR   Running 'testthat.R' [48s] Running the tests in 'tests/testthat.R' failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(JointFPM)   >   > test_check("JointFPM")   Starting 2 test processes   [ FAIL 2 | WARN 0 | SKIP 13 | PASS 24 ]      ══ Skipped tests (13) ══════════════════════════════════════════════════════════   • On CRAN (13): 'test-mean_no.R:2:3', 'test-mean_no.R:17:3',     'test-JointFPM.R:2:3', 'test-JointFPM.R:22:3', 'test-JointFPM.R:42:3',     'test-JointFPM.R:62:3', 'test-JointFPM.R:83:3',     'test-predict.JointFPM.R:2:3', 'test-predict.JointFPM.R:78:3',     'test-predict.JointFPM.R:103:3', 'test-predict.JointFPM.R:130:3',     'test-predict.JointFPM.R:156:3', 'test-predict.JointFPM.R:496:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-test_dfs_JointFPM.R:2:3'): Stable output of test run ───────────   Error in `UseMethod("logLik")`: no applicable method for 'logLik' applied to an object of class "c('stpm2', 'mle2')"   Backtrace:       ▆    1. └─testthat::expect_snapshot(...) at test-test_dfs_JointFPM.R:2:3    2. └─rlang::cnd_signal(state$error)   ── Error ('test-test_dfs_JointFPM.R:25:5'): Stable output of test run ──────────   Error in `UseMethod("logLik")`: no applicable method for 'logLik' applied to an object of class "c('stpm2', 'mle2')"   Backtrace:        ▆     1. ├─testthat::expect_equal(...) at test-test_dfs_JointFPM.R:23:3     2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")     3. │ └─rlang::eval_bare(expr, quo_get_env(quo))     4. └─JointFPM::test_dfs_JointFPM(...) at test-test_dfs_JointFPM.R:25:5     5. └─base::lapply(...)     6. └─JointFPM (local) FUN(X[[i]], ...)     7. └─JointFPM:::test_df(...)     8. ├─base::cbind(out, list(stats::AIC(model$model), stats::BIC(model$model)))     9. │ └─base::cbind(deparse.level, ...)    10. │ └─base::data.frame(..., check.names = FALSE)    11. ├─stats::AIC(model$model)    12. └─stats:::AIC.default(model$model)    13. └─stats (local) ll(object)      [ FAIL 2 | WARN 0 | SKIP 13 | PASS 24 ]   Error: Test failures   Execution halted
• checking PDF version of manual ... [28s] OK
• checking HTML version of manual ... [2s] OK
• DONE

Status: 2 ERRORs