- using R Under development (unstable) (2023-03-21 r84017 ucrt)
- using platform: x86_64-w64-mingw32 (64-bit)
- R was compiled by
gcc.exe (GCC) 12.2.0
GNU Fortran (GCC) 12.2.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'DCD/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'DCD' version '0.1.0'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'DCD' can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [12s] OK
- checking whether the package can be loaded with stated dependencies ... [11s] OK
- checking whether the package can be unloaded cleanly ... [12s] OK
- checking whether the namespace can be loaded with stated dependencies ... [12s] OK
- checking whether the namespace can be unloaded cleanly ... [12s] OK
- checking loading without being on the library search path ... [12s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [27s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
- checking examples ... [29s] ERROR
Running examples in 'DCD-Ex.R' failed
The error most likely occurred in:
> ### Name: DCD
> ### Title: Differential Community Detection for Paired Biological Networks,
> ### for e.g. case vs control
> ### Aliases: DCD
>
> ### ** Examples
>
>
> DCD_output <- DCD()
..connectivity..
..matrix multiplication (system BLAS)..
..normalization..
..done.
..connectivity..
..matrix multiplication (system BLAS)..
..normalization..
..done.
> ## Not run:
> ##D library(igraph)
> ##D g_A <- sample_grg(200, 0.15, torus=FALSE, coords = FALSE)
> ##D g_B <- permute(g_A,c(sample(20),21:200))
> ##D ground_truth <- c(rep(1,20),rep(0,180))
> ##D DCD_output2 <- DCD(g_A = g_A, g_B = g_B, method = "Spectral", mink = 7,
> ##D ground_truth = ground_truth, plot_flag = 1, color = "red",
> ##D iter = 1, cores = 1 )
> ##D
> ## End(Not run)
>
>
>
> cleanEx()
Error: connections left open:
<-CRANWIN2.fb05.statistik.uni-dortmund.de:11101 (sockconn)
Execution halted
- checking PDF version of manual ... [24s] OK
- checking HTML version of manual ... [1s] OK
- DONE
Status: 1 ERROR, 1 NOTE