- using R Under development (unstable) (2026-09-10 r90519 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 14.3.0
GNU Fortran (GCC) 14.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
* current time: 2026-09-11 06:36:48 UTC
- checking for file 'BayesianFitForecast/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'BayesianFitForecast' version '1.1.1'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'BayesianFitForecast' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [4s] OK
- checking whether the package can be loaded with stated dependencies ... [3s] OK
- checking whether the package can be unloaded cleanly ... [3s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s] OK
- checking whether the namespace can be unloaded cleanly ... [4s] OK
- checking loading without being on the library search path ... [4s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [9s] OK
- checking Rd files ... [0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [5s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [67s] ERROR
Running 'testthat.R' [66s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(BayesianFitForecast)
>
> test_check("BayesianFitForecast")
Option file path: D:/RCompile/CRANpkg/lib/4.7/BayesianFitForecast/extdata/option.R
Excel file path: D:/RCompile/CRANpkg/lib/4.7/BayesianFitForecast/extdata/SanFrancisco.xlsx
Output path: D:\temp\2026_09_11_01_50_00_25671\Rtmpo7N792
Loading required package: StanHeaders
rstan version 2.32.7 (Stan version 2.39.0)
For execution on a local, multicore CPU with excess RAM we recommend calling
options(mc.cores = parallel::detectCores()).
To avoid recompilation of unchanged Stan programs, we recommend calling
rstan_options(auto_write = TRUE)
For within-chain threading using `reduce_sum()` or `map_rect()` Stan functions,
change `threads_per_chain` option:
rstan_options(threads_per_chain = 1)
Do not specify '-march=native' in 'LOCAL_CPPFLAGS' or a Makevars file
specified C++17
make cmd is
make -f "D:/RCompile/recent/R/etc/x64/Makeconf" -f "D:/RCompile/recent/R/share/make/winshlib.mk" CXX='$(CXX17) $(CXX17STD)' CXXFLAGS='$(CXX17FLAGS)' CXXPICFLAGS='$(CXX17PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX17LDFLAGS)' SHLIB_LD='$(SHLIB_CXX17LD)' SHLIB="file43ac664e7816.dll" WIN=64 TCLBIN= OBJECTS="file43ac664e7816.o"
make would use
make[1]: Entering directory '/d/temp/2026_09_11_01_50_00_25671/Rtmpo7N792'
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"D:/RCompile/CRANpkg/lib/4.7/Rcpp/include/" -I"D:/temp/2026_09_11_01_50_00_25671/RtmpygM4xJ/RLIBS_17347fb4b7a/RcppEigen/include/" -I"D:/temp/2026_09_11_01_50_00_25671/RtmpygM4xJ/RLIBS_17347fb4b7a/RcppEigen/include/unsupported" -I"D:/temp/2026_09_11_01_50_00_25671/RtmpygM4xJ/RLIBS_17347fb4b7a/BH/include" -I"D:/RCompile/CRANpkg/lib/4.7/StanHeaders/include/src/" -I"D:/RCompile/CRANpkg/lib/4.7/StanHeaders/include/" -I"D:/RCompile/CRANpkg/lib/4.7/RcppParallel/include/" -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -ID:/RCompile/CRANpkg/lib/4.7/RcppParallel/include -I"D:/RCompile/CRANpkg/lib/4.7/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -include "D:/RCompile/CRANpkg/lib/4.7/StanHeaders/include/stan/math/prim/fun/Eigen.hpp" -std=c++1y -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c file43ac664e7816.cpp -o file43ac664e7816.o
if test "zfile43ac664e7816.o" != "z"; then \
if test -e "file43ac664e7816-win.def"; then \
echo g++ -shared -s -static-libgcc -o file43ac664e7816.dll file43ac664e7816-win.def file43ac664e7816.o "D:/RCompile/CRANpkg/lib/4.7/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.7/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.7/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.7/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.7/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
g++ -shared -s -static-libgcc -o file43ac664e7816.dll file43ac664e7816-win.def file43ac664e7816.o "D:/RCompile/CRANpkg/lib/4.7/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.7/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.7/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.7/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.7/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
else \
echo EXPORTS > tmp.def; \
nm file43ac664e7816.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
echo g++ -shared -s -static-libgcc -o file43ac664e7816.dll tmp.def file43ac664e7816.o "D:/RCompile/CRANpkg/lib/4.7/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.7/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.7/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.7/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.7/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
g++ -shared -s -static-libgcc -o file43ac664e7816.dll tmp.def file43ac664e7816.o "D:/RCompile/CRANpkg/lib/4.7/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.7/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.7/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.7/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.7/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
rm -f tmp.def; \
fi \
fi
make[1]: Leaving directory '/d/temp/2026_09_11_01_50_00_25671/Rtmpo7N792'
Saving _problems/test-Run_MCMC-27.R
Data file path: D:/RCompile/CRANpkg/lib/4.7/BayesianFitForecast/extdata
Option file path: D:/RCompile/CRANpkg/lib/4.7/BayesianFitForecast/extdata/option.R
Excel file path: D:/RCompile/CRANpkg/lib/4.7/BayesianFitForecast/extdata/SanFrancisco.xlsx
Output path: D:\temp\2026_09_11_01_50_00_25671\Rtmpo7N792
This is bayesplot version 1.16.0
- Online documentation and vignettes at mc-stan.org/bayesplot
- bayesplot theme set to bayesplot::theme_default()
* Does _not_ affect other ggplot2 plots
* See ?bayesplot_theme_set for details on theme setting
Loaded file: D:\RCompile\CRANpkg\lib\4.7\BayesianFitForecast\extdata/Bayesian-uniform-cal-17-fcst-0-poisson-sanfrancisco-fit.Rdata
No time-dependent templates provided — skipping time-dependent plots.
[ FAIL 1 | WARN 6 | SKIP 0 | PASS 8 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-Run_MCMC.R:25:5'): Run_MCMC works with example files ───────────
Error in `sink(type = "output")`: invalid connection
Backtrace:
▆
1. ├─base::eval(...)
2. │ └─base::eval(...)
3. │ ├─testthat::expect_no_error(Run_MCMC(option_file, excel_file, output_path)) at test-Run_MCMC.R:25:5
4. │ │ └─testthat:::expect_no_(...)
5. │ │ └─testthat:::quasi_capture(enquo(object), NULL, capture)
6. │ │ ├─testthat (local) .capture(...)
7. │ │ │ ├─base::withRestarts(...)
8. │ │ │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
9. │ │ │ │ └─base (local) doWithOneRestart(return(expr), restart)
10. │ │ │ └─base::withCallingHandlers(...)
11. │ │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
12. │ └─BayesianFitForecast::Run_MCMC(option_file, excel_file, output_path)
13. │ ├─base::tryCatch(...)
14. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
15. │ └─base::source(temp_file, local = FALSE)
16. │ ├─base::withVisible(eval(ei, envir))
17. │ └─base::eval(ei, envir)
18. │ └─base::eval(ei, envir)
19. └─rstan::stan_model(file.path(output_path, "ode_model.stan"))
20. └─rstan:::cxxfunctionplus(...)
21. └─base::sink(type = "output")
[ FAIL 1 | WARN 6 | SKIP 0 | PASS 8 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [2s] OK
- checking PDF version of manual ... [19s] OK
- checking HTML version of manual ... [0s] OK
- DONE
Status: 1 ERROR