* installing *source* package 'ATNr' ...
** this is package 'ATNr' version '1.1.1'
** package 'ATNr' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 14.2.0'
make[1]: Entering directory '/d/temp/2025_09_25_01_50_00_17305/RtmpQD14Sx/R.INSTALL1f4e4716b4008/ATNr/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32,
from RcppExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Scaled.cpp -o Scaled.o
In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32,
from Scaled.cpp:1:
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
Scaled.cpp: In member function 'arma::vec Scaled::ODE(arma::vec, double)':
Scaled.cpp:166:20: warning: 'arma::Mat<typename T1::elem_type> arma::pow(const subview_each1<parent, mode>&, const Base<typename parent::elem_type, T2>&) [with parent = Mat<double>; unsigned int mode = 1; T2 = Op<Col<double>, op_htrans>; typename T1::elem_type = double; typename parent::elem_type = double]' is deprecated: refactor your code to use pow() in conjunction with repmat() [-Wdeprecated-declarations]
166 | pow_bioms = pow(pow_bioms.each_row(), q.t());
| ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:614:
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_powext.hpp:50:1: note: declared here
50 | pow
| ^~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Scaled_loops.cpp -o Scaled_loops.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Unscaled.cpp -o Unscaled.o
In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32,
from Unscaled.cpp:1:
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
Unscaled.cpp: In member function 'arma::vec Unscaled::ODE(arma::vec, double)':
Unscaled.cpp:145:20: warning: 'arma::Mat<typename T1::elem_type> arma::pow(const subview_each1<parent, mode>&, const Base<typename parent::elem_type, T2>&) [with parent = Mat<double>; unsigned int mode = 1; T2 = Op<Col<double>, op_htrans>; typename T1::elem_type = double; typename parent::elem_type = double]' is deprecated: refactor your code to use pow() in conjunction with repmat() [-Wdeprecated-declarations]
145 | pow_bioms = pow(pow_bioms.each_row(), q.t());
| ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:614:
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_powext.hpp:50:1: note: declared here
50 | pow
| ^~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Unscaled_loops.cpp -o Unscaled_loops.o
Unscaled_loops.cpp: In constructor 'Unscaled_loops::Unscaled_loops(int, int)':
Unscaled_loops.cpp:101:29: warning: unused variable 'cons' [-Wunused-variable]
101 | IntegerVector::iterator cons;
| ^~~~
Unscaled_loops.cpp:102:29: warning: unused variable 'cons2' [-Wunused-variable]
102 | IntegerVector::iterator cons2;
| ^~~~~
Unscaled_loops.cpp:103:29: warning: unused variable 'res' [-Wunused-variable]
103 | IntegerVector::iterator res;
| ^~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Unscaled_nuts.cpp -o Unscaled_nuts.o
In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32,
from Unscaled_nuts.cpp:1:
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
Unscaled_nuts.cpp: In member function 'arma::vec Unscaled_nuts::ODE(arma::vec, double)':
Unscaled_nuts.cpp:195:20: warning: 'arma::Mat<typename T1::elem_type> arma::pow(const subview_each1<parent, mode>&, const Base<typename parent::elem_type, T2>&) [with parent = Mat<double>; unsigned int mode = 1; T2 = Op<Col<double>, op_htrans>; typename T1::elem_type = double; typename parent::elem_type = double]' is deprecated: refactor your code to use pow() in conjunction with repmat() [-Wdeprecated-declarations]
195 | pow_bioms = pow(pow_bioms.each_row(), q.t());
| ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:614:
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_powext.hpp:50:1: note: declared here
50 | pow
| ^~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Unscaled_nuts_loops.cpp -o Unscaled_nuts_loops.o
In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32,
from Unscaled_nuts_loops.cpp:1:
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -shared -s -static-libgcc -o ATNr.dll tmp.def RcppExports.o Scaled.o Scaled_loops.o Unscaled.o Unscaled_loops.o Unscaled_nuts.o Unscaled_nuts_loops.o -fopenmp -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_09_25_01_50_00_17305/RtmpQD14Sx/R.INSTALL1f4e4716b4008/ATNr/src'
make[1]: Entering directory '/d/temp/2025_09_25_01_50_00_17305/RtmpQD14Sx/R.INSTALL1f4e4716b4008/ATNr/src'
make[1]: Leaving directory '/d/temp/2025_09_25_01_50_00_17305/RtmpQD14Sx/R.INSTALL1f4e4716b4008/ATNr/src'
installing to d:/Rcompile/CRANpkg/lib/4.6/00LOCK-ATNr/00new/ATNr/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'ATNr' as ATNr_1.1.1.zip
* DONE (ATNr)