* installing *source* package 'AGHmatrix' ...
** this is package 'AGHmatrix' version '3.0.1'
** package 'AGHmatrix' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 14.3.0'
make[1]: Entering directory '/d/temp/2026_07_24_01_50_00_28611/Rtmp0qqzsi/R.INSTALL956c37d5574/AGHmatrix/src'
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c amatrix_kerr.cpp -o amatrix_kerr.o
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c amatrix_ploidy2.cpp -o amatrix_ploidy2.o
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c amatrix_slater.cpp -o amatrix_slater.o
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ascii_to_number.cpp -o ascii_to_number.o
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c check_matrix.cpp -o check_matrix.o
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c datatreat.cpp -o datatreat.o
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c diploid_p0p2_TwoPQ.cpp -o diploid_p0p2_TwoPQ.o
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dominance_matrix.cpp -o dominance_matrix.o
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gmatrix_endelman.cpp -o gmatrix_endelman.o
gmatrix_endelman.cpp: In function 'arma::mat Gmatrix_Endelman(const arma::mat&, int)':
gmatrix_endelman.cpp:11:29: warning: unused variable 'm' [-Wunused-variable]
11 | const uword n = M.n_rows, m = M.n_cols;
| ^
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gmatrix_markers_mask.cpp -o gmatrix_markers_mask.o
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gmatrix_slater.cpp -o gmatrix_slater.o
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gmatrix_su.cpp -o gmatrix_su.o
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gmatrix_vanraden.cpp -o gmatrix_vanraden.o
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gmatrix_vanraden_poly.cpp -o gmatrix_vanraden_poly.o
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gmatrix_vitezica.cpp -o gmatrix_vitezica.o
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hmatrix_martini.cpp -o hmatrix_martini.o
hmatrix_martini.cpp: In function 'Rcpp::List H_martini_blocks(const arma::mat&, const arma::mat&, const arma::mat&, double, double)':
hmatrix_martini.cpp:30:15: warning: unused variable 'n1' [-Wunused-variable]
30 | const uword n1 = A12.n_rows;
| ^~
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hmatrix_munoz.cpp -o hmatrix_munoz.o
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c slater_par.cpp -o slater_par.o
g++ -std=gnu++20 -shared -s -static-libgcc -o AGHmatrix.dll tmp.def RcppExports.o amatrix_kerr.o amatrix_ploidy2.o amatrix_slater.o ascii_to_number.o check_matrix.o datatreat.o diploid_p0p2_TwoPQ.o dominance_matrix.o gmatrix_endelman.o gmatrix_markers_mask.o gmatrix_slater.o gmatrix_su.o gmatrix_vanraden.o gmatrix_vanraden_poly.o gmatrix_vitezica.o hmatrix_martini.o hmatrix_munoz.o slater_par.o -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lquadmath -fopenmp -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2026_07_24_01_50_00_28611/Rtmp0qqzsi/R.INSTALL956c37d5574/AGHmatrix/src'
make[1]: Entering directory '/d/temp/2026_07_24_01_50_00_28611/Rtmp0qqzsi/R.INSTALL956c37d5574/AGHmatrix/src'
make[1]: Leaving directory '/d/temp/2026_07_24_01_50_00_28611/Rtmp0qqzsi/R.INSTALL956c37d5574/AGHmatrix/src'
installing to d:/Rcompile/CRANpkg/lib/4.7/00LOCK-AGHmatrix/00new/AGHmatrix/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'AGHmatrix' as AGHmatrix_3.0.1.zip
* DONE (AGHmatrix)