• using R Under development (unstable) (2021-04-09 r80154)
• using platform: x86_64-w64-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'pct/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'pct' version '0.8.0'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'pct' can be installed ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... NOTE
    Note: found 11 marked UTF-8 strings
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... ERROR
  Running examples in 'pct-Ex.R' failed
  The error most likely occurred in:
  
  > ### Name: uptake_pct_govtarget
  > ### Title: Calculate cycling uptake for UK 'Government Target' scenario
  > ### Aliases: uptake_pct_govtarget uptake_pct_govtarget_2020
  > ### uptake_pct_godutch_2020 uptake_pct_govtarget_school2
  > ### uptake_pct_godutch_school2
  >
  > ### ** Examples
  >
  > distance = 15
  > gradient = 2
  > logit_pcycle = -3.959 + # alpha
  + (-0.5963 * distance) + # d1
  + (1.866 * sqrt(distance)) + # d2
  + (0.008050 * distance^2) + # d3
  + (-0.2710 * gradient) + # h1
  + (0.009394 * distance * gradient) + # i1
  + (-0.05135 * sqrt(distance) * gradient) # i2
  > boot::inv.logit(logit_pcycle)
  [1] 0.0107377
  > uptake_pct_govtarget(15, 2)
  [1] 0.0107377
  > l = routes_fast_leeds
  > pcycle_scenario = uptake_pct_govtarget(l$length, l$av_incline)
  > pcycle_scenario_2020 = uptake_pct_govtarget_2020(l$length, l$av_incline)
  > plot(l$length, pcycle_scenario, ylim = c(0, 0.2))
  > points(l$length, pcycle_scenario_2020, col = "blue")
  >
  > # compare with published PCT data:
  > l_pct_2020 = get_pct_lines(region = "isle-of-wight")
  Warning in CPL_read_ogr(dsn, layer, query, as.character(options), quiet, :
    GDAL Error 1: SSL certificate problem: unable to get local issuer certificate
  Error: Cannot open "https://github.com/npct/pct-outputs-regional-notR/raw/master/commute/lsoa/isle-of-wight/l.geojson"; The file doesn't seem to exist.
  Execution halted
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... ERROR
    Running 'skip-heavy.R'
    Running 'testthat.R'
  Running the tests in 'tests/testthat.R' failed.
  Last 13 lines of output:
    == Failed tests ================================================================
    -- Error (test-get-pct.R:11:3): get_pct_ works ---------------------------------
    Error: Cannot open "https://github.com/npct/pct-outputs-regional-notR/raw/master/commute/lsoa/isle-of-wight/z.geojson"; The file doesn't seem to exist.
    Backtrace:
        x
     1. \-pct::get_pct_zones("isle-of-wight") test-get-pct.R:11:2
     2. \-pct::get_pct(...)
     3. \-sf::read_sf(u_file)
     4. +-sf::st_read(...)
     5. \-sf:::st_read.character(...)
     6. \-sf:::CPL_read_ogr(...)
    
    [ FAIL 1 | WARN 1 | SKIP 1 | PASS 14 ]
    Error: Test failures
    Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking running R code from vignettes ... NONE
    'cycling-potential-uk.Rmd' using 'UTF-8'... OK
    'km-cycled.Rmd' using 'UTF-8'... OK
    'pct-international.Rmd' using 'UTF-8'... OK
    'pct.Rmd' using 'UTF-8'... OK
    'pct_training.Rmd' using 'UTF-8'... OK
    'uk-cities.Rmd' using 'UTF-8'... OK
• checking re-building of vignette outputs ... WARNING
  Error(s) in re-building vignettes:
  --- re-building 'cycling-potential-uk.Rmd' using rmarkdown
  --- finished re-building 'cycling-potential-uk.Rmd'
  
  --- re-building 'km-cycled.Rmd' using rmarkdown
  Warning in CPL_read_ogr(dsn, layer, query, as.character(options), quiet, :
    GDAL Error 1: SSL certificate problem: unable to get local issuer certificate
  Quitting from lines 31-37 (km-cycled.Rmd)
  Error: processing vignette 'km-cycled.Rmd' failed with diagnostics:
  Cannot open "https://github.com/npct/pct-outputs-regional-notR/raw/master/commute/lsoa/oxfordshire/rnet_full.geojson"; The file doesn't seem to exist.
  --- failed re-building 'km-cycled.Rmd'
  
  --- re-building 'pct-international.Rmd' using rmarkdown
  --- finished re-building 'pct-international.Rmd'
  
  --- re-building 'pct.Rmd' using rmarkdown
  Linking to GEOS 3.6.2, GDAL 3.0.4, PROJ 7.0.0
  
  Attaching package: 'dplyr'
  
  The following objects are masked from 'package:stats':
  
      filter, lag
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, setequal, union
  
  Quitting from lines 115-117 (pct.Rmd)
  Error: processing vignette 'pct.Rmd' failed with diagnostics:
  Cannot open "https://github.com/npct/pct-outputs-regional-notR/raw/master/commute/msoa/isle-of-wight/c.geojson"; The file doesn't seem to exist.
  --- failed re-building 'pct.Rmd'
  
  --- re-building 'pct_training.Rmd' using rmarkdown
  Quitting from lines 237-242 (pct_training.Rmd)
  Error: processing vignette 'pct_training.Rmd' failed with diagnostics:
  Cannot open "https://github.com/npct/pct-outputs-regional-notR/raw/master/commute/msoa/isle-of-wight/z.geojson"; The file doesn't seem to exist.
  --- failed re-building 'pct_training.Rmd'
  
  --- re-building 'uk-cities.Rmd' using rmarkdown
  
  Attaching package: 'dplyr'
  
  The following objects are masked from 'package:stats':
  
      filter, lag
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, setequal, union
  
  Linking to GEOS 3.6.2, GDAL 3.0.4, PROJ 7.0.0
  Quitting from lines 45-47 (uk-cities.Rmd)
  Error: processing vignette 'uk-cities.Rmd' failed with diagnostics:
  Cannot open "https://github.com/npct/pct-outputs-regional-notR/raw/master/commute/lsoa/wales/z.geojson"; The file doesn't seem to exist.
  --- failed re-building 'uk-cities.Rmd'
  
  SUMMARY: processing the following files failed:
    'km-cycled.Rmd' 'pct.Rmd' 'pct_training.Rmd' 'uk-cities.Rmd'
  
  Error: Vignette re-building failed.
  Execution halted
  
• checking PDF version of manual ... OK
• DONE

Status: 2 ERRORs, 1 WARNING, 1 NOTE