Check results for 'squat'

using R Under development (unstable) (2025-01-24 r87627)
using platform: aarch64-apple-darwin20
R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 14.2.0
running under: macOS Ventura 13.4
using session charset: UTF-8
checking for file ‘squat/DESCRIPTION’ ... OK
this is package ‘squat’ version ‘0.3.0’
package encoding: UTF-8
checking package namespace information ... OK
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checking whether package ‘squat’ can be installed ... [27s/31s] OK See the install log for details.
used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
used SDK: ‘MacOSX11.3.sdk’
checking installed package size ... INFO installed size is 13.7Mb sub-directories of 1Mb or more: data 1.1Mb help 1.1Mb libs 11.3Mb
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checking examples ... [5s/5s] ERROR Running examples in ‘squat-Ex.R’ failed The error most likely occurred in: > ### Name: autoplot.qtsclust > ### Title: Plot for 'qtsclust' objects > ### Aliases: autoplot.qtsclust > > ### ** Examples > > ## Don't show: > if (requireNamespace("ggplot2", quietly = TRUE)) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf + ## End(Don't show) + out <- kmeans(vespa64$igp[1:10], n_clusters = 2) + ggplot2::autoplot(out) + ## Don't show: + }) # examplesIf > out <- kmeans(vespa64$igp[1:10], n_clusters = 2) Error in `check_option_compatibility()`: ! The L2 metric is neither dilation-invariant nor affine-invariant. Backtrace: ▆ 1. ├─(if (getRversion() >= "3.4") withAutoprint else force)(...) 2. │ └─base::source(...) 3. │ ├─base::withVisible(eval(ei, envir)) 4. │ └─base::eval(ei, envir) 5. │ └─base::eval(ei, envir) 6. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) 7. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2) 8. └─fdacluster::fdakmeans(...) 9. └─fdacluster:::check_option_compatibility(...) 10. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.") 11. └─rlang::abort(...) Execution halted
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [9s/10s] ERROR Running ‘testthat.R’ [9s/10s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(squat) Attaching package: 'squat' The following objects are masked from 'package:stats': dist, hclust, kmeans, smooth The following objects are masked from 'package:base': append, scale > > test_check("squat") Attaching package: 'purrr' The following object is masked from 'package:testthat': is_null i The maximum number of principal component is 15. i The maximum number of principal component is 15. The `original_space` boolean argument is not specified. Defaulting to TRUE. The `plane` length-2 integer vector argument is not specified. Defaulting to 1:2. i The maximum number of principal component is 15. The `original_space` boolean argument is not specified. Defaulting to TRUE. [ FAIL 6 | WARN 0 | SKIP 28 | PASS 27 ] ══ Skipped tests (28) ══════════════════════════════════════════════════════════ • On CRAN (28): 'test-DTW.R:2:3', 'test-interface.R:2:3', 'test-interface.R:7:3', 'test-interface.R:12:3', 'test-interface.R:24:3', 'test-interface.R:31:3', 'test-interface.R:36:3', 'test-interface.R:41:3', 'test-interface.R:46:3', 'test-qts-class.R:15:3', 'test-qts-class.R:23:3', 'test-qts-class.R:31:3', 'test-qts-class.R:49:3', 'test-qts-dist.R:5:3', 'test-qts-dist.R:15:3', 'test-qts-prcomp.R:3:3', 'test-qts-prcomp.R:21:3', 'test-qts-sample-class.R:7:3', 'test-qts-sample-class.R:18:5', 'test-qts-sample-class.R:30:3', 'test-qts-sample-class.R:67:3', 'test-qts-sample-class.R:71:3', 'test-qts-sample-class.R:75:3', 'test-qts-sample-class.R:91:3', 'test-qts-transformations.R:2:3', 'test-qts-transformations.R:6:3', 'test-qts-transformations.R:11:3', 'test-qts-transformations.R:16:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-qts-dbscan.R:8:3'): Function dbscan.qts_sample() works ───────── Error in `check_option_compatibility(is_domain_interval = is_domain_interval, transformation = transformation, warping_class = warping_class, metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant. Backtrace: ▆ 1. ├─squat::dbscan(vespa64$igp[1:10]) at test-qts-dbscan.R:8:3 2. └─squat:::dbscan.qts_sample(vespa64$igp[1:10]) 3. └─fdacluster::fdadbscan(...) 4. └─fdacluster:::check_option_compatibility(...) 5. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.") 6. └─rlang::abort(...) ── Error ('test-qts-dist.R:9:3'): Function dist.qts_sample() works via fdacluster pkg ── Error in `fdacluster::fdadist(x = l$grid, y = l$values, warping_class = warping_class, metric = metric, cluster_on_phase = cluster_on_phase, labels = labels)`: `warping_class` must be one of "none", "shift", "dilation", "affine", or "bpd", not "affine". Backtrace: ▆ 1. ├─squat::dist(vespa64$igp[1:5]) at test-qts-dist.R:9:3 2. └─squat:::dist.qts_sample(vespa64$igp[1:5]) 3. └─fdacluster::fdadist(warping_class = warping_class) 4. └─rlang::arg_match(warping_class) 5. └─rlang::abort(msg, call = error_call, arg = error_arg) ── Error ('test-qts-hclust.R:7:3'): Function hclust.qts_sample() works ───────── Error in `check_option_compatibility(is_domain_interval = is_domain_interval, transformation = transformation, warping_class = warping_class, metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant. Backtrace: ▆ 1. ├─squat::hclust(vespa64$igp[1:10], n_clusters = 2) at test-qts-hclust.R:7:3 2. └─squat:::hclust.qts_sample(vespa64$igp[1:10], n_clusters = 2) 3. └─fdacluster::fdahclust(...) 4. └─fdacluster:::check_option_compatibility(...) 5. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.") 6. └─rlang::abort(...) ── Error ('test-qts-kmeans.R:8:5'): Function kmeans.qts_sample() works ───────── Error in `check_option_compatibility(is_domain_interval = is_domain_interval, transformation = transformation, warping_class = warping_class, metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant. Backtrace: ▆ 1. ├─withr::with_seed(...) at test-qts-kmeans.R:7:3 2. │ └─withr::with_preserve_seed(...) 3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:8:5 4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2) 5. └─fdacluster::fdakmeans(...) 6. └─fdacluster:::check_option_compatibility(...) 7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.") 8. └─rlang::abort(...) ── Error ('test-qts-kmeans.R:15:5'): Visualization code for k-means work ─────── Error in `check_option_compatibility(is_domain_interval = is_domain_interval, transformation = transformation, warping_class = warping_class, metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant. Backtrace: ▆ 1. ├─withr::with_seed(...) at test-qts-kmeans.R:14:3 2. │ └─withr::with_preserve_seed(...) 3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:15:5 4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2) 5. └─fdacluster::fdakmeans(...) 6. └─fdacluster:::check_option_compatibility(...) 7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.") 8. └─rlang::abort(...) ── Error ('test-qts-kmeans.R:26:5'): Visualization functions for PCA work ────── Error in `check_option_compatibility(is_domain_interval = is_domain_interval, transformation = transformation, warping_class = warping_class, metric = metric)`: The L2 metric is neither dilation-invariant nor affine-invariant. Backtrace: ▆ 1. ├─withr::with_seed(...) at test-qts-kmeans.R:25:3 2. │ └─withr::with_preserve_seed(...) 3. ├─squat::kmeans(vespa64$igp[1:10], n_clusters = 2) at test-qts-kmeans.R:26:5 4. └─squat:::kmeans.qts_sample(vespa64$igp[1:10], n_clusters = 2) 5. └─fdacluster::fdakmeans(...) 6. └─fdacluster:::check_option_compatibility(...) 7. └─cli::cli_abort("The L2 metric is neither dilation-invariant nor affine-invariant.") 8. └─rlang::abort(...) [ FAIL 6 | WARN 0 | SKIP 28 | PASS 27 ] Deleting unused snapshots: • qts-class/qts-plot-with-change-points.svg • qts-kmeans/k-means-plot.svg • qts-prcomp/colored-score-plot.svg • qts-prcomp/score-plot.svg • qts-prcomp/screeplot.svg • qts-sample-class/qts-sample-plot-with-highlighted-observations.svg • qts-sample-class/qts-sample-plot-with-memberships.svg Error: Test failures Execution halted
checking PDF version of manual ... [4s/5s] OK
DONE Status: 2 ERRORs
using check arguments '--no-clean-on-error '