* installing *source* package ‘scorematchingad’ ... ** this is package ‘scorematchingad’ version ‘0.1.1’ ** package ‘scorematchingad’ successfully unpacked and MD5 sums checked ** using staged installation checking for cmake... /Applications/CMake.app/Contents/bin/cmake configure: Running CMake... CMake Deprecation Warning at CMakeLists.txt:11 (CMAKE_MINIMUM_REQUIRED): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is AppleClang 14.0.0.14000029 -- The CXX compiler identification is AppleClang 14.0.0.14000029 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/clang - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/clang++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- cmake_install_datadir = share -- cmake_install_docdir = NOTFOUND -- cmake_install_includedirs = include -- cmake_install_libdirs = lib -- cmake_defined_ok = TRUE -- cppad_prefix = /usr/local -- cppad_postfix = NOTFOUND -- cppad_cxx_flags = -- cppad_profile_flag = NOTFOUND -- cppad_testvector = cppad -- cppad_max_num_threads = 48 -- cppad_tape_id_type = unsigned int -- cppad_tape_addr_type = unsigned int -- cppad_static_lib = FALSE -- cppad_debug_and_release = TRUE -- Performing Test minimal_cplusplus -- Performing Test minimal_cplusplus - Success -- minimal_cplusplus = 1 -- Performing Test use_cplusplus_2017_ok -- Performing Test use_cplusplus_2017_ok - Success -- use_cplusplus_2017_ok = 1 -- CMAKE_SYSTEM_NAME = Darwin -- cppad_debug_which = debug_none -- CMAKE_BUILD_TYPE = minsizerel -- make check: avialable -- include_adolc = FALSE -- include_ipopt = FALSE -- CMAKE_CXX_FLAGS_RELEASE = -O3 -DNDEBUG -- Skipping OpenMP on Darwin (Mac) systems. 2DO: fix this CMake Warning (dev) at CMakeLists.txt:418 (FIND_PACKAGE): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /opt/R/arm64/lib/cmake/Boost-1.86.0/BoostConfig.cmake (found version "1.86.0") found components: thread -- boost_prefix = /opt/R/arm64 -- Found /opt/R/arm64/include -- Found /opt/R/arm64/lib -- is_cppad_lib_dynamic = 1 -- cppad_c_compiler_cmd = clang -- c_compiler_msvc_clang = 0 -- cppad_c_compiler_msvc_flags = 0 -- cppad_c_compiler_gnu_flags = 1 -- cppad_boostvector = 0 -- cppad_cppadvector = 1 -- cppad_eigenvector = 0 -- cppad_stdvector = 0 -- Performing Test cppad_has_gettimeofday -- Performing Test cppad_has_gettimeofday - Success -- cppad_has_gettimeofday = 1 -- Performing Test cppad_tape_id_type_is_unsigned -- Performing Test cppad_tape_id_type_is_unsigned - Success -- cppad_tape_id_type_is_unsigned = 1 -- Performing Test cppad_tape_addr_type_is_unsigned -- Performing Test cppad_tape_addr_type_is_unsigned - Success -- cppad_tape_addr_type_is_unsigned = 1 -- Performing Test cppad_has_mkstemp -- Performing Test cppad_has_mkstemp - Success -- cppad_has_mkstemp = 1 -- Performing Test cppad_has_tmpnam_s -- Performing Test cppad_has_tmpnam_s - Failed -- cppad_has_tmpnam_s = 0 -- Performing Test cppad_is_same_unsigned_int_size_t -- Performing Test cppad_is_same_unsigned_int_size_t - Failed -- cppad_is_same_unsigned_int_size_t = 0 -- Performing Test cppad_is_same_tape_addr_type_size_t -- Performing Test cppad_is_same_tape_addr_type_size_t - Failed -- cppad_is_same_tape_addr_type_size_t = 0 -- Performing Test first_block_t_mod_double_zero -- Performing Test first_block_t_mod_double_zero - Success -- first_block_t_mod_double_zero = 1 -- Performing Test second_block_t_mod_double_zero -- Performing Test second_block_t_mod_double_zero - Success -- second_block_t_mod_double_zero = 1 -- soversion = 1828.5 -- Not Windows system so building shared cppad_lib -- make check_val_graph: available -- make check_example_abs_normal: available -- make check_example_atomic_four_lin_ode: available -- make check_example_atomic_four_mat_mul: available -- make check_example_atomic_four_vector: available -- make check_example_atomic_four: available -- make check_example_atomic_three: available -- make check_example_atomic_two: available -- make check_example_chkpoint_two: available -- make check_example_compare_change: available -- make check_example_general: available -- make check_example_get_started: available -- make check_example_graph: available -- make check_example_jit: available -- make check_example_json: available -- pthread library path = /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/lib/libpthread.tbd -- Looking for pthread_barrier_wait in pthread -- Looking for pthread_barrier_wait in pthread - not found -- Performing Test boost_multi_thread_ok -- Performing Test boost_multi_thread_ok - Success -- boost_multi_thread_ok = 1 -- make check_example_multi_thread_bthread: available -- make check_example_multi_thread: available -- make check_example_optimize: available -- make check_example_print_for: available -- make check_example_sparse: available -- make check_example_utility: available -- make check_example: available -- make check_introduction: available -- make check_test_more_deprecated_atomic_two: available -- make check_test_more_deprecated_chkpoint_one: available -- make check_test_more_deprecated: available -- make check_test_more_compare_c_c: available -- make check_test_more_compare_c_cpp: available -- make check_test_more_compare_c: available -- make check_test_more_debug_rel: available -- make check_test_more_general: available -- make check_test_more: available -- make check_speed_cppad: available -- make check_speed_cppad_jit: available -- make check_speed_double: available -- make check_speed_example: available -- make check_speed_program: available -- make check_speed_xpackage: available -- make check_speed: available -- Configuring done (7.0s) -- Generating done (0.5s) -- Build files have been written to: /Volumes/Builds/packages/big-sur-arm64/results/4.5/scorematchingad.Rcheck/00_pkg_src/scorematchingad/inst/cppad/build /Volumes/Builds/packages/big-sur-arm64/results/4.5/scorematchingad.Rcheck/00_pkg_src/scorematchingad [1] TRUE [1] TRUE configure: creating ./config.status ** libs using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c abort_recording.cpp -o abort_recording.o In file included from abort_recording.cpp:3: In file included from ../inst/include/scorematchingad_forward.h:6: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/RcppCommon.h:130: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/exceptions.h:60:21: warning: inline function 'Rcpp::exception::record_stack_trace' is not defined [-Wundefined-inline] inline void record_stack_trace(); ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/exceptions.h:41:13: note: used here record_stack_trace(); ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/exceptions.h:55:21: warning: inline function 'Rcpp::exception::copy_stack_trace_to_r' is not defined [-Wundefined-inline] inline void copy_stack_trace_to_r() const; ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/exceptions.h:348:8: note: used here ex.copy_stack_trace_to_r(); ^ In file included from abort_recording.cpp:3: In file included from ../inst/include/scorematchingad_forward.h:6: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/RcppCommon.h:128: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/protection/protection.h:23: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/protection/Armor.h:38:23: warning: inline function 'Rcpp::Armor::operator=' is not defined [-Wundefined-inline] inline Armor& operator=( const U& x ) ; ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/r_cast.h:35:21: note: used here res = Rcpp_fast_eval(call, R_GlobalEnv); ^ 3 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c approx.cpp -o approx.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c error_handler.cpp -o error_handler.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c exposemanifold.cpp -o exposemanifold.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fixdynamic.cpp -o fixdynamic.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c pADFun.cpp -o pADFun.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c pADFun_retape.cpp -o pADFun_retape.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tapebdryweight.cpp -o tapebdryweight.o In file included from tapebdryweight.cpp:1: In file included from ./tapebdryweight.h:4: In file included from ../inst/include/scorematchingad_forward.h:6: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/RcppCommon.h:130: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/exceptions.h:60:21: warning: inline function 'Rcpp::exception::record_stack_trace' is not defined [-Wundefined-inline] inline void record_stack_trace(); ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/exceptions.h:41:13: note: used here record_stack_trace(); ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/exceptions.h:55:21: warning: inline function 'Rcpp::exception::copy_stack_trace_to_r' is not defined [-Wundefined-inline] inline void copy_stack_trace_to_r() const; ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/exceptions.h:348:8: note: used here ex.copy_stack_trace_to_r(); ^ In file included from tapebdryweight.cpp:1: In file included from ./tapebdryweight.h:4: In file included from ../inst/include/scorematchingad_forward.h:6: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/RcppCommon.h:128: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/protection/protection.h:23: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/protection/Armor.h:38:23: warning: inline function 'Rcpp::Armor::operator=' is not defined [-Wundefined-inline] inline Armor& operator=( const U& x ) ; ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/r_cast.h:35:21: note: used here res = Rcpp_fast_eval(call, R_GlobalEnv); ^ 3 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tapell.cpp -o tapell.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tapesmd.cpp -o tapesmd.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c temp_file.cpp -o temp_file.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o scorematchingad.so RcppExports.o abort_recording.o approx.o error_handler.o exposemanifold.o fixdynamic.o pADFun.o pADFun_retape.o tapebdryweight.o tapell.o tapesmd.o temp_file.o -F/Library/Frameworks/R.framework/.. -framework R installing to /Volumes/Builds/packages/big-sur-arm64/results/4.5/scorematchingad.Rcheck/00LOCK-scorematchingad/00new/scorematchingad/libs ** generating debug symbols (dSYM) ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading in method for ‘print’ with signature ‘"Rcpp_ADFun"’: no definition for class “Rcpp_ADFun” in method for ‘show’ with signature ‘"Rcpp_ADFun"’: no definition for class “Rcpp_ADFun” ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scorematchingad)