• using R version 4.6.0 alpha (2026-03-26 r89725)
  • using platform: aarch64-apple-darwin23
  • R was compiled by     Apple clang version 17.0.0 (clang-1700.3.19.1)     GNU Fortran (GCC) 14.2.0
  • running under: macOS Sequoia 15.7.1
  • using session charset: UTF-8 * current time: 2026-03-28 06:48:36 UTC
  • checking for file ‘readepi/DESCRIPTION’ ... OK
  • this is package ‘readepi’ version ‘1.0.4’
  • package encoding: UTF-8
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘readepi’ can be installed ... [1s/1s] OK See the install log for details.
  • checking installed package size ... INFO   installed size is 6.3Mb   sub-directories of 1Mb or more:     doc 5.8Mb
  • checking package directory ... OK
  • checking ‘build’ directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking code files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... [0s/0s] OK
  • checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
  • checking whether the package can be unloaded cleanly ... [0s/0s] OK
  • checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
  • checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
  • checking loading without being on the library search path ... [0s/0s] OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [1s/1s] OK
  • checking Rd files ... [0s/0s] OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... [0s/0s] OK
  • checking LazyData ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking files in ‘vignettes’ ... OK
  • checking examples ... [0s/1s] OK
  • checking for unstated dependencies in ‘tests’ ... OK
  • checking tests ... [0s/0s] OK   Running ‘testthat.R’ [0s/0s]
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes ... OK
  • checking re-building of vignette outputs ... [5s/9s] ERROR Error(s) in re-building vignettes: --- re-building ‘design_principle.Rmd’ using rmarkdown --- finished re-building ‘design_principle.Rmd’ --- re-building ‘install_drivers.Rmd’ using rmarkdown --- finished re-building ‘install_drivers.Rmd’ --- re-building ‘query_parameters.Rmd’ using rmarkdown --- finished re-building ‘query_parameters.Rmd’ --- re-building ‘readepi.Rmd’ using rmarkdown Quitting from readepi.Rmd:87-98 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `.local()`: ! Failed to connect to database: Error: TLS/SSL error: self-signed certificate in certificate chain --- Backtrace:      ▆   1. └─readepi::login(...)   2. └─pool::dbPool(...)   3. └─pool::poolCreate(...)   4. └─Pool$new(...)   5. └─pool (local) initialize(...)   6. └─private$createObject(error_call = error_call)   7. └─private$factory()   8. ├─DBI::dbConnect(drv, ...)   9. └─RMySQL::dbConnect(drv, ...)  10. └─RMySQL (local) .local(drv, ...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'readepi.Rmd' failed with diagnostics: Failed to connect to database: Error: TLS/SSL error: self-signed certificate in certificate chain --- failed re-building ‘readepi.Rmd’ SUMMARY: processing the following file failed:   ‘readepi.Rmd’ Error: Vignette re-building failed. Execution halted
  • checking PDF version of manual ... [2s/2s] OK
  • DONE Status: 1 ERROR
  • using check arguments '--no-clean-on-error '