* installing *source* package ‘psqn’ ...
** this is package ‘psqn’ version ‘0.3.2’
** package ‘psqn’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/testthat/include' -I/opt/R/arm64/include -I../inst/include/ -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/testthat/include' -I/opt/R/arm64/include -I../inst/include/ -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -c r-api.cpp -o r-api.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/testthat/include' -I/opt/R/arm64/include -I../inst/include/ -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -c test-intrapolate.cpp -o test-intrapolate.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/testthat/include' -I/opt/R/arm64/include -I../inst/include/ -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -c test-lp.cpp -o test-lp.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/testthat/include' -I/opt/R/arm64/include -I../inst/include/ -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -c test-richardson-extrapolation.cpp -o test-richardson-extrapolation.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/testthat/include' -I/opt/R/arm64/include -I../inst/include/ -DPSQN_W_LAPACK -fPIC -falign-functions=64 -Wall -g -O2 -c test-runner.cpp -o test-runner.o
In file included from r-api.cpp:6:
In file included from ../inst/include/psqn-Rcpp-wrapper.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | IIn file included from RcppExports.cpp:5:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
ndexIn file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273 count = 0;
| ^
:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from RcppExports.cpp:5:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | IndeIn file included from r-api.cpp:6:
In file included from ../inst/include/psqn-Rcpp-wrapper.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29:
In file included from x nsuper_e/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29t_p:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLUost:35:
= 0; //Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78/ N:9:umber of relax warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]ed snodes in p
78 | Inostdexordered et nsree
| ^
uper_et/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79_post = 0; // :9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsNumber uper_et = 0; /of / Nrelumbaxeer of relaxed d ssnonoddeses inin thpose otorrigderinaed l eetrtreee e
| ^
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from RcppExports.cpp:5:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from r-api.cpp:6:
In file included from ../inst/include/psqn-Rcpp-wrapper.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from RcppExports.cpp:5:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from r-api.cpp:6:
In file included from ../inst/include/psqn-Rcpp-wrapper.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
In file included from r-api.cpp:6:
In file included from ../inst/include/psqn-Rcpp-wrapper.h:9:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include/RcppCommon.h:30:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include/Rcpp/r/headers.h:66:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include/Rcpp/platform/compiler.h:39:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/unordered_map:598:
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/__memory/allocator.h:172:9: warning: destructor called on non-final 'r_worker_psqn' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
172 | __p->~_Tp();
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/__memory/allocator_traits.h:315:13: note: in instantiation of member function 'std::allocator<r_worker_psqn>::destroy' requested here
315 | __a.destroy(__p);
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/vector:944:25: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<r_worker_psqn>>::destroy<r_worker_psqn, void>' requested here
944 | __alloc_traits::destroy(__alloc(), std::__to_address(--__soon_to_be_end));
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/vector:938:29: note: in instantiation of member function 'std::vector<r_worker_psqn>::__base_destruct_at_end' requested here
938 | void __clear() _NOEXCEPT {__base_destruct_at_end(this->__begin_);}
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/vector:489:20: note: in instantiation of member function 'std::vector<r_worker_psqn>::__clear' requested here
489 | __vec_.__clear();
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/vector:500:67: note: in instantiation of member function 'std::vector<r_worker_psqn>::__destroy_vector::operator()' requested here
500 | _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector(*this)(); }
| ^
r-api.cpp:404:30: note: in instantiation of member function 'std::vector<r_worker_psqn>::~vector' requested here
404 | std::vector<r_worker_psqn> funcs;
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/__memory/allocator.h:172:15: note: qualify call to silence this warning
172 | __p->~_Tp();
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/__memory/allocator.h:172:9: warning: destructor called on non-final 'r_worker_optimizer_generic' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
172 | __p->~_Tp();
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/__memory/allocator_traits.h:315:13: note: in instantiation of member function 'std::allocator<r_worker_optimizer_generic>::destroy' requested here
315 | __a.destroy(__p);
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/vector:944:25: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<r_worker_optimizer_generic>>::destroy<r_worker_optimizer_generic, void>' requested here
944 | __alloc_traits::destroy(__alloc(), std::__to_address(--__soon_to_be_end));
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/vector:938:29: note: in instantiation of member function 'std::vector<r_worker_optimizer_generic>::__base_destruct_at_end' requested here
938 | void __clear() _NOEXCEPT {__base_destruct_at_end(this->__begin_);}
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/vector:489:20: note: in instantiation of member function 'std::vector<r_worker_optimizer_generic>::__clear' requested here
489 | __vec_.__clear();
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/vector:500:67: note: in instantiation of member function 'std::vector<r_worker_optimizer_generic>::__destroy_vector::operator()' requested here
500 | _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector(*this)(); }
| ^
r-api.cpp:1284:43: note: in instantiation of member function 'std::vector<r_worker_optimizer_generic>::~vector' requested here
1284 | std::vector<r_worker_optimizer_generic> funcs;
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/__memory/allocator.h:172:15: note: qualify call to silence this warning
172 | __p->~_Tp();
| ^
5 warnings generated.
7 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o psqn.so RcppExports.o r-api.o test-intrapolate.o test-lp.o test-richardson-extrapolation.o test-runner.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/psqn.Rcheck/00LOCK-psqn/00new/psqn/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (psqn)