* installing *source* package ‘pcalg’ ...
** this is package ‘pcalg’ version ‘2.7-12’
** package ‘pcalg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include   -I"../inst/include" -fPIC  -falign-functions=64 -Wall -g -O2   -c constraint.cpp -o constraint.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include   -I"../inst/include" -fPIC  -falign-functions=64 -Wall -g -O2   -c gies.cpp -o gies.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include   -I"../inst/include" -fPIC  -falign-functions=64 -Wall -g -O2   -c greedy.cpp -o greedy.o
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c init.c -o init.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include   -I"../inst/include" -fPIC  -falign-functions=64 -Wall -g -O2   -c score.cpp -o score.o
In file included from greedy.cpp:8:
In file included from ../inst/include/pcalg/greedy.hpp:11:
In file included from ../inst/include/pcalg/score.hpp:12:
../inst/include/pcalg/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
In file included from score.cpp:6:
In file included from ../inst/include/pcalg/score.hpp:12:
../inst/include/pcalg/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
In file included from constraint.cpp:8:
In file included from ../inst/include/pcalg/constraint.hpp:8:
../inst/include/pcalg/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
In file included from gies.cpp:21:
In file included from ../inst/include/pcalg/constraint.hpp:8:
../inst/include/pcalg/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined]
   17 | #define NDEBUG
      |         ^
<command line>:1:9: note: previous definition is here
    1 | #define NDEBUG 1
      |         ^
score.cpp:170:29: warning: unused variable 'vi' [-Wunused-variable]
  170 |         std::vector<int>::iterator vi;
      |                                    ^~
greedy.cpp:862:30: warning: unused variable 'vi' [-Wunused-variable]
  862 |         std::vector<uint>::iterator vi;
      |                                     ^~
1 warning generated.
2 warnings generated.
1 warning generated.
2 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o pcalg.so constraint.o gies.o greedy.o init.o score.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/pcalg.Rcheck/00LOCK-pcalg/00new/pcalg/libs
** generating debug symbols (dSYM)
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pcalg)