* installing *source* package ‘mrfse’ ...
** this is package ‘mrfse’ version ‘0.4.2’
** package ‘mrfse’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c array.cpp -o array.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c combination.cpp -o combination.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mrfse.cpp -o mrfse.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mrfse_ci.cpp -o mrfse_ci.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c product.cpp -o product.o
In file included from product.cpp:4:
In file included from ./array.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include/Rcpp.h:27:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include/RcppCommon.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
27 | #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debugIn file included from combination.cpp:4:
In file included from ./array.h:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include/Rcpp.h:27:
errors, and is not necIn file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include/RcppCommon.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: essary. See https://github.com/RcppCore/Rcpp/issues/warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
1410"
| ^
27 | #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
| ^
mrfse.cpp:143:9: warning: variable 'accepted' set but not used [-Wunused-but-set-variable]
143 | int accepted = 0;
| ^
mrfse.cpp:288:16: warning: unused variable 'j' [-Wunused-variable]
288 | int i = 0, j = 0;
| ^
mrfse.cpp:308:9: warning: unused variable 'n' [-Wunused-variable]
308 | int n = aa.size();
| ^
mrfse.cpp:334:9: warning: unused variable 'n' [-Wunused-variable]
334 | int n = aa.size();
| ^
mrfse_ci.cpp:139:16: warning: unused variable 'j' [-Wunused-variable]
139 | int i = 0, j = 0;
| ^
mrfse_ci.cpp:295:10: warning: unused variable 'e' [-Wunused-variable]
295 | int e = 3 + b[i][j];
| ^
mrfse_ci.cpp:309:10: warning: unused variable 'e' [-Wunused-variable]
309 | int e = c[i][j] + 34;
| ^
mrfse_ci.cpp:320:9: warning: unused variable 'n' [-Wunused-variable]
320 | int n = aa.size();
| ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c simulated_annealing.cpp -o simulated_annealing.o
1 warning generated.
mrfse_ci.cpp:23:13: warning: unused variable 'use_kl' [-Wunused-variable]
23 | static bool use_kl;
| ^~~~~~
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c util.cpp -o util.o
4 warnings generated.
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o mrfse.so RcppExports.o array.o combination.o mrfse.o mrfse_ci.o product.o simulated_annealing.o util.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/mrfse.Rcheck/00LOCK-mrfse/00new/mrfse/libs
** generating debug symbols (dSYM)
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mrfse)