* installing *source* package ‘knnmi’ ...
** this is package ‘knnmi’ version ‘1.0’
** package ‘knnmi’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -Iinclude/ -Iinclude/eigen3/ -DNDEBUG -DEIGEN_NO_DEBUG -DEIGEN_NO_IO -fPIC -falign-functions=64 -Wall -g -O2 -c CondMutualInformation.cpp -o CondMutualInformation.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -Iinclude/ -Iinclude/eigen3/ -DNDEBUG -DEIGEN_NO_DEBUG -DEIGEN_NO_IO -fPIC -falign-functions=64 -Wall -g -O2 -c MI_Matrix.cpp -o MI_Matrix.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -Iinclude/ -Iinclude/eigen3/ -DNDEBUG -DEIGEN_NO_DEBUG -DEIGEN_NO_IO -fPIC -falign-functions=64 -Wall -g -O2 -c MutualInformation.cpp -o MutualInformation.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -Iinclude/ -Iinclude/eigen3/ -DNDEBUG -DEIGEN_NO_DEBUG -DEIGEN_NO_IO -fPIC -falign-functions=64 -Wall -g -O2 -c MutualInformationBase.cpp -o MutualInformationBase.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -Iinclude/ -Iinclude/eigen3/ -DNDEBUG -DEIGEN_NO_DEBUG -DEIGEN_NO_IO -fPIC -falign-functions=64 -Wall -g -O2 -c MutualInformationDiscrete.cpp -o MutualInformationDiscrete.o
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c knn_mi_lib.c -o knn_mi_lib.o
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o
In file included from MutualInformation.cpp:21:
In file included from include/MutualInformation.h:24:
In file included from include/eigen3/Eigen/Core:382:
include/eigen3/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from MutualInformationBase.cpp:22:
In file included from include/MutualInformationBase.h:24:
In file included from include/eigen3/Eigen/Core:382:
include/eigen3/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from MI_Matrix.cpp:35:
In file included from include/MutualInformation.h:24:
In file included from include/eigen3/Eigen/Core:382:
include/eigen3/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from CondMutualInformation.cpp:22:
In file included from include/CondMutualInformation.h:23:
In file included from include/eigen3/Eigen/Core:382:
include/eigen3/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from MutualInformationDiscrete.cpp:21:
In file included from include/MutualInformationDiscrete.h:24:
In file included from include/eigen3/Eigen/Core:382:
include/eigen3/Eigen/src/Core/util/ReenableStupidWarnings.h:14:33: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
14 | #pragma clang diagnostic pop
| ^
In file included from MutualInformation.cpp:21:
include/MutualInformation.h:50:18: warning: 'CaDrA::MutualInformation::compute' hides overloaded virtual function [-Woverloaded-virtual]
50 | virtual double compute(const ArrayXd &x, const ArrayXd& y) ;
| ^
include/MutualInformationBase.h:65:24: note: hidden overloaded virtual function 'CaDrA::MutualInformationBase::compute' declared here: different number of parameters (0 vs 2)
65 | virtual double compute() ;
| ^
In file included from MI_Matrix.cpp:35:
include/MutualInformation.h:50:18: warning: 'CaDrA::MutualInformation::compute' hides overloaded virtual function [-Woverloaded-virtual]
50 | virtual double compute(const ArrayXd &x, const ArrayXd& y) ;
| ^
include/MutualInformationBase.h:65:24: note: hidden overloaded virtual function 'CaDrA::MutualInformationBase::compute' declared here: different number of parameters (0 vs 2)
65 | virtual double compute() ;
| ^
In file included from MI_Matrix.cpp:36:
include/MutualInformationDiscrete.h:50:18: warning: 'CaDrA::MutualInformationDiscrete::compute' hides overloaded virtual function [-Woverloaded-virtual]
50 | virtual double compute(const ArrayXd &x, const ArrayXi& y) ;
| ^
include/MutualInformationBase.h:65:24: note: hidden overloaded virtual function 'CaDrA::MutualInformationBase::compute' declared here: different number of parameters (0 vs 2)
65 | virtual double compute() ;
| ^
In file included from MI_Matrix.cpp:37:
include/CondMutualInformation.h:49:24: warning: 'CaDrA::CondMutualInformation::compute' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double compute(const ArrayXd &x, const ArrayXd& y, const ArrayXd& z) ;
| ^
include/MutualInformationBase.h:65:24: note: hidden overloaded virtual function 'CaDrA::MutualInformationBase::compute' declared here: different number of parameters (0 vs 3)
65 | virtual double compute() ;
| ^
In file included from MI_Matrix.cpp:37:
include/CondMutualInformation.h:54:24: warning: 'CaDrA::CondMutualInformation::sum_digamma_from_neighbors' hides overloaded virtual function [-Woverloaded-virtual]
54 | virtual double sum_digamma_from_neighbors(MapArrayConst &vec1, MapArrayConst &vec2, const vector<double> &dists) ;
| ^
include/MutualInformationBase.h:81:24: note: hidden overloaded virtual function 'CaDrA::MutualInformationBase::sum_digamma_from_neighbors' declared here: different number of parameters (2 vs 3)
81 | virtual double sum_digamma_from_neighbors(MapArrayConst &vec, const vector<double> &dists) ;
| ^
In file included from CondMutualInformation.cpp:22:
include/CondMutualInformation.h:49:24: warning: 'CaDrA::CondMutualInformation::compute' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double compute(const ArrayXd &x, const ArrayXd& y, const ArrayXd& z) ;
| ^
include/MutualInformationBase.h:65:24: note: hidden overloaded virtual function 'CaDrA::MutualInformationBase::compute' declared here: different number of parameters (0 vs 3)
65 | virtual dIn file included from MutualInformationDiscrete.cpp:21:
include/MutualInformationDiscrete.h:50:18: warning: 'CaDrA::MutualInformationDiscrete::compute' hides overloaded virtual function [-Woverloaded-virtual]
ouble 50 | vcomirtual double compuputte(conste() Ar ;
| ^
In file included from CondMutualInformation.cpp:22:
include/CondMutualInformation.hray:54:Xd &x, const Arr24: ayXwarning: 'CaDrA::CondMutualInformation::sum_digamma_from_neighbors' hides overloaded virtual function [-Woverloaded-virtual]
i 54 | virtual& y) ;
| ^ double s
uinclude/MutualInformationBase.h:65:24: note: hidden overloaded virtual function 'CaDrA::MutualInformationBase::compute' declared here: different number of parameters (0 vs 2)m_d
65 | igamma_from_n eighbors(MapArrayConst & virvectua1, MapArrayConstl double compute() ;
| ^
&vec2, const vector<double> &dists) ;
| ^
include/MutualInformationBase.h:81:24: note: hidden overloaded virtual function 'CaDrA::MutualInformationBase::sum_digamma_from_neighbors' declared here: different number of parameters (2 vs 3)
81 | virtual double sum_digamma_from_neighbors(MapArrayConst &vec, const vector<double> &dists) ;
| ^
5 warnings generated.
2 warnings generated.
1 warning generated.
3 warnings generated.
2 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o knnmi.so CondMutualInformation.o MI_Matrix.o MutualInformation.o MutualInformationBase.o MutualInformationDiscrete.o knn_mi_lib.o registerDynamicSymbol.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/knnmi.Rcheck/00LOCK-knnmi/00new/knnmi/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (knnmi)