* installing *source* package ‘genepop’ ...
** this is package ‘genepop’ version ‘1.2.14’
** package ‘genepop’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CT_tests.cpp -o CT_tests.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c F_est.cpp -o F_est.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c GenepopS.cpp -o GenepopS.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c HW_tests.cpp -o HW_tests.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGenepop.cpp -o RGenepop.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
In file included from GenepopS.cpp:56:
./CT_tests.h:115In file included from CT_tests.cpp:40:
./CT_tests.h:115:42: warning: unused variable 'pp' [-Wunused-variable]
115 | std::vec:42: warning: unused variable 'pp' [-Wunused-variable]
tor 115 | std::vector<CPopulation *>::iterator p,pp; /<CPopulation *>::iterator p,pp; /// CPopulat CPopulation contient les popName()
| ^~
./CT_tests.h:116ion contient les popNam:39: warning: unused variable 'p1' [-Wunused-variable]
e()
| ^~
116 | std::v./CT_tests.h:116:39: warning: unused variable 'p1' [-Wunused-variable]
ector<CGeno 116 | std::vector<CGenotyptypes *>:es *>::it:iterator p1,erator p1,p2; // CGenotypes contient toute l'info sap2; // CGenuf les popNaotypes contient toute l'info sauf les popName(me()
| ^~
)./CT_tests.h:116:42: warning: unused variable 'p2' [-Wunused-variable]
116 |
| ^~
./CT_tests.h:116:42 std::vector<CGenotypes *>:: warning: unused variable 'p2' [-Wunused-variable]
:iterator p 116 | std::vector<CGenotypes *>::iterator p1,p2; // C1,p2; // CGenotypes cGenotypes conontient toute tient toute l'info l'info sauf les popName()
| ^~sauf les popName()
| ^~
HW_tests.cpp:247:23: warning: variable 'necess_mark' set but not used [-Wunused-but-set-variable]
247 | int possible_exact=0, necess_mark=0;
| ^
HW_tests.cpp:1650:10: warning: variable 'kfi' set but not used [-Wunused-but-set-variable]
1650 | size_t kfi,allele, k;
| ^
CT_tests.cpp:783:34: warning: unused variable 'p1' [-Wunused-variable]
783 | vector<CGenotypes *>::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName()
| ^~
CT_tests.cpp:783:37: warning: unused variable 'p2' [-Wunused-variable]
783 | vector<CGenotypes *>::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName()
| ^~
GenepopS.cpp:1489:16: warning: variable 'popit' set but not used [-Wunused-but-set-variable]
1489 | size_t nb_all,popit;
| ^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bootstrap.cpp -o bootstrap.o
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c conversions.cpp -o conversions.o
2 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c genepop.cpp -o genepop.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c multimig.cpp -o multimig.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c proba.cpp -o proba.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c settings.cpp -o settings.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tools.cpp -o tools.o
4 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o genepop.so CT_tests.o F_est.o GenepopS.o HW_tests.o RGenepop.o RcppExports.o bootstrap.o conversions.o genepop.o multimig.o proba.o settings.o tools.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/genepop.Rcheck/00LOCK-genepop/00new/genepop/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (genepop)