- using R Under development (unstable) (2026-02-10 r89394)
- using platform: aarch64-apple-darwin23
- R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
- running under: macOS Sequoia 15.7.1
- using session charset: UTF-8
* current time: 2026-02-12 02:26:05 UTC
- checking for file ‘fmeffects/DESCRIPTION’ ... OK
- this is package ‘fmeffects’ version ‘0.1.4’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘fmeffects’ can be installed ... [5s/6s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [2s/2s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [5s/5s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [3s/3s] OK
Running ‘testthat.R’ [3s/3s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [8s/18s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘fme_theory.Rmd’ using rmarkdown
--- finished re-building ‘fme_theory.Rmd’
--- re-building ‘fmeffects.Rmd’ using rmarkdown
Quitting from fmeffects.Rmd:121-127 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/purrr_error_indexed>
Error:
ℹ In index: 1.
Caused by error in `.__Task__col_roles()`:
! Assertion on 'names(rhs)' failed: Names must be a permutation of set {'feature','target','name','order','stratum','group','offset','weights_learner','weights_measure'}, but has extra elements {'always_included'}.
---
Backtrace:
▆
1. ├─parallel (local) workRSOCK()
2. │ └─parallel:::workLoop(...)
3. │ └─parallel:::workCommand(master)
4. │ ├─base::tryCatch(...)
5. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
8. │ ├─base::tryCatch(...)
9. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
10. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
11. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
12. │ ├─base::do.call(msg$data$fun, msg$data$args, quote = TRUE)
13. │ └─future (local) `<fn>`(base::quote(`<named list>`))
14. │ ├─base::tryCatch(...)
15. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
16. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
17. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
18. │ └─future:::evalFutureInternal(data)
19. │ ├─base::tryCatch(...)
20. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
21. │ │ ├─base (local) tryCatchOne(...)
22. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
23. │ │ └─base (local) tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
24. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
25. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
26. │ ├─base::tryCatch(...)
27. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
28. │ ├─base::withCallingHandlers(...)
29. │ ├─base::withVisible(...)
30. │ └─base::eval(expr, envir = globalenv())
31. │ └─base::eval(expr, envir = globalenv())
32. ├─base::local(...)
33. │ └─base::eval.parent(substitute(eval(quote(expr), envir)))
34. │ └─base::eval(expr, p)
35. │ └─base::eval(expr, p)
36. ├─base::eval(...)
37. │ └─base::eval(...)
38. │ ├─base::do.call(...furrr_map_fn, args)
39. │ └─purrr (local) `<fn>`(.x = `<int>`, .f = `<fn>`)
40. │ └─purrr:::map_("double", .x, .f, ..., .progress = .progress)
41. │ ├─purrr:::with_indexed_errors(...)
42. │ │ └─base::withCallingHandlers(...)
43. │ ├─purrr:::call_with_cleanup(...)
44. │ └─.f(.x[[i]], ...)
45. │ └─fmeffects (local) ...furrr_fn(...)
46. │ └─fmeffects (local) nlm_id(.x)
47. │ └─NonLinearityMeasure$new(...)
48. │ └─fmeffects (local) initialize(...)
49. │ └─private$nlmCompute(...)
50. │ └─fmeffects (local) simpson(prediction.s, subintervals)
51. │ └─fmeffects (local) f(0/s + m)
52. │ └─predictor$predict(observation.t)
53. │ ├─data.table::as.data.table(self$model$predict_newdata(newdata))
54. │ └─self$model$predict_newdata(newdata)
55. │ └─mlr3:::.__Learner__predict_newdata(...)
56. └─mlr3 (local) `<fn>`(base::quote(`<named list>`))
57. └─mlr3:::.__Task__col_roles(...)
58. └─checkmate::assert_names(names(rhs), "unique", permutation.of = mlr_reflections$task_col_roles[[self$task_type]])
59. └─checkmate::makeAssertion(x, res, .var.name, add)
60. └─checkmate:::mstop(...)
61. └─base::stop(simpleError(sprintf(msg, ...), call.))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'fmeffects.Rmd' failed with diagnostics:
ℹ In index: 1.
Caused by error in `.__Task__col_roles()`:
! Assertion on 'names(rhs)' failed: Names must be a permutation of set {'feature','target','name','order','stratum','group','offset','weights_learner','weights_measure'}, but has extra elements {'always_included'}.
--- failed re-building ‘fmeffects.Rmd’
SUMMARY: processing the following file failed:
‘fmeffects.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [3s/3s] OK
- DONE
Status: 1 ERROR
- using check arguments '--no-clean-on-error '