* installing *source* package ‘fastei’ ... ** this is package ‘fastei’ version ‘0.0.0.12’ ** package ‘fastei’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’ using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’ using SDK: ‘MacOSX14.5.sdk’ clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c LP.c -o LP.o clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c MCMC.c -o MCMC.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bootstrap.c -o bootstrap.o clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dynamic_program.c -o dynamic_program.o clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c exact.c -o exact.o LP.c:23:20: warning: unused function 'row_copy' [-Wunused-function] 23 | static inline void row_copy(int n, const double *src, double *dst) | ^~~~~~~~ exact.c:241:10: warning: unused variable 'HSETS' [-Wunused-variable] 241 | Set *HSETS = ctx->hset; | ^~~~~ exact.c:285:10: warning: unused variable 'KSETS' [-Wunused-variable] 285 | Set *KSETS = ctx->kset; | ^~~~~ bootstrap.c:134:9: warning: unused variable 'samples' [-Wunused-variable] 134 | int samples = bdim * bootiter; | ^~~~~~~ bootstrap.c:135:9: warning: unused variable 'matsize' [-Wunused-variable] 135 | int matsize = wmat->coexact.c:431:10: warning: unused variable 'KSETS' [-Wunused-variable] 431 | ls * MCMC.c:183:14: warning: unused variable 'arraySize' [-Wunused-variable] Set *KSETS xmat->rows; | ^~~~~~~ = 183 | ctx->kuint3set2_t arraySize = M * S; | ^~~~~~~~~ ; | ^~~~~ exact.c:432:10: warning: unused variable 'HSETS' [-Wunused-variable] 432 | Set *HSETS = ctx->hset; | ^~~~~ exact.c:590:10: warning: unused variable 'KSETS' [-Wunused-variable] 590 | Set *KSETS = ctx->kset; | ^~~~~ exact.c:591:10: warning: unused variable 'HSETS' [-Wunused-variable] 591 | Set *HSETS = ctx->hset; | ^~~~~ bootstrap.c:267:9: warning: unused variable 'matsize' [-Wunused-variable] 267 | int matsize = xmat->rows; | ^~~~~~~ MCMC.c:395:13: warning: unused variable 'W' [-Wunused-variable] 395 | Matrix *W = &ctx->W; // Get the W matrix | ^ MCMC.c:531:20: warning: unused variable 'qsum' [-Wunused-variable] 531 | double qsum = 0; | ^~~~ MCMC.c:517:13: warning: unused variable 'W' [-Wunused-variable] 517 | Matrix *W = &ctx->W; // Get the W matrix | ^ MCMC.c:522:12: warning: variable 'borrar' set but not used [-Wunused-but-set-variable] 522 | double borrar = 0; | ^ MCMC.c:523:12: warning: variable 'borrar2' set but not used [-Wunused-but-set-variable] 523 | double borrar2 = 0; | ^ MCMC.c:584:27: warning: unused variable 'currentMatrix' [-Wunused-variable] 584 | IntMatrix currentMatrix = currentSet->data[s]; // Z | ^~~~~~~~~~~~~ MCMC.c:552:13: warning: unused variable 'X' [-Wunused-variable] 552 | Matrix *X = &ctx->X; | ^ MCMC.c:554:16: warning: unused variable 'intX' [-Wunused-variable] 554 | IntMatrix *intX = &ctx->intX; | ^~~~ MCMC.c:555:16: warning: unused variable 'intW' [-Wunused-variable] 555 | IntMatrix *intW = &ctx->intW; | ^~~~ MCMC.c:557:13: warning: unused variable 'probabilities' [-Wunused-variable] 557 | Matrix *probabilities = &ctx->probabilities; | ^~~~~~~~~~~~~ 3 warnings generated. clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c main.c -o main.o clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c multinomial.c -o multinomial.o 6 warnings generated. clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c multivariate-cdf.c -o multivariate-cdf.o 11 warnings generated. clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c multivariate-pdf.c -o multivariate-pdf.o main.c:145:16: warning: unused variable 'sum' [-Wunused-variable] 145 | double sum = 0.0; | ^~~ main.c:624:25: warning: variable 'status' set but not used [-Wunused-but-set-variable] 624 | int status; | ^ main.c:582:10: warning: unused variable 'mismatch' [-Wunused-variable] 582 | bool mismatch = hasMismatch(X, W); | ^~~~~~~~ main.c:202:13: warning: unused function 'checkQRowSums' [-Wunused-function] 202 | static void checkQRowSums(const EMContext *ctx, const char *stage, int iter) | ^~~~~~~~~~~~~ 1 warning generated. multinomial.c:107:13: warning: unused variable 'X' [-Wunused-variable] 107 | Matrix *X = &ctx->X; | ^ multinomial.c:108:13: warning: unused variable 'W' [-Wunused-variable] 108 | Matrix *W = &ctx->W; | ^ multinomial.c:110:16: warning: unused variable 'intW' [-Wunused-variable] 110 | IntMatrix *intW = &ctx->intW; | ^~~~ clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utils_hash.c -o utils_hash.o 3 warnings generated. clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utils_matrix.c -o utils_matrix.o utils_matrix.c:62:13: warning: unused function 'transposeMatrix' [-Wunused-function] 62 | static void transposeMatrix(const double *src, int rows, int cols, double *dst) | ^~~~~~~~~~~~~~~ clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utils_multivariate.c -o utils_multivariate.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c wrapper.cpp -o wrapper.o 4 warnings generated. utils_multivariate.c:230:10: warning: unused variable 'trans' [-Wunused-variable] 230 | char trans = 'N'; // (There's no separate transpose flag in dger, | ^~~~~ 1 warning generated. 1 warning generated. clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o fastei.so LP.o MCMC.o RcppExports.o bootstrap.o dynamic_program.o exact.o main.o multinomial.o multivariate-cdf.o multivariate-pdf.o utils_hash.o utils_matrix.o utils_multivariate.o wrapper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/fastei.Rcheck/00LOCK-fastei/00new/fastei/libs ** generating debug symbols (dSYM) ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastei)