Check results for 'ez'

using R Under development (unstable) (2025-11-24 r89059)
using platform: aarch64-apple-darwin23
R was compiled by Apple clang version 17.0.0 (clang-1700.3.19.1) GNU Fortran (GCC) 14.2.0
running under: macOS Sequoia 15.7.1
using session charset: UTF-8
checking for file ‘ez/DESCRIPTION’ ... OK
this is package ‘ez’ version ‘4.4-0’
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checking whether package ‘ez’ can be installed ... [4s/4s] OK See the install log for details.
checking installed package size ... OK
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checking R code for possible problems ... [3s/3s] OK
checking Rd files ... [0s/0s] NOTE checkRd: (-1) ez-package.Rd:19: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:20: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:21: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:23: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:24: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) ez-package.Rd:33: Lost braces in \itemize; meant \describe ?
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checking examples ... [5s/5s] ERROR Running examples in ‘ez-Ex.R’ failed The error most likely occurred in: > ### Name: ezPlot > ### Title: Plot data from a factorial experiment > ### Aliases: ezPlot > > ### ** Examples > > #Read in the ANT data (see ?ANT). > data(ANT) > head(ANT) subnum group block trial cue flank location direction rt 1 1 Treatment 1 1 None Neutral up left 398.6773 2 1 Treatment 1 2 Center Neutral up left 389.1822 3 1 Treatment 1 3 Double Neutral up left 333.2186 4 1 Treatment 1 4 Spatial Neutral up left 419.7640 5 1 Treatment 1 5 None Congruent up left 446.4754 6 1 Treatment 1 6 Center Congruent up left 338.9766 error 1 0 2 0 3 0 4 0 5 0 6 0 > ezPrecis(ANT) Data frame dimensions: 5760 rows, 10 columns type missing values min max subnum factor 0 20 1 20 group factor 0 2 Control Treatment block numeric 0 6 1 6 trial numeric 0 48 1 48 cue factor 0 4 None Spatial flank factor 0 3 Neutral Incongruent location factor 0 2 down up direction factor 0 2 left right rt numeric 0 5760 179.5972 657.6986 error numeric 0 2 0 1 > > > ## Not run: > ##D #Run an ANOVA on the mean correct RT data. > ##D mean_rt_anova = ezANOVA( > ##D data = ANT[ANT$error==0,] > ##D , dv = .(rt) > ##D , wid = .(subnum) > ##D , within = .(cue,flank) > ##D , between = .(group) > ##D ) > ##D > ##D #Show the ANOVA and assumption tests. > ##D print(mean_rt_anova) > ## End(Not run) > > #Plot the main effect of group. > group_plot = ezPlot( + data = ANT[ANT$error==0,] + , dv = .(rt) + , wid = .(subnum) + , between = .(group) + , x = .(group) + , do_lines = FALSE + , x_lab = 'Group' + , y_lab = 'RT (ms)' + ) Warning: Collapsing data to cell means. *IF* the requested effects are a subset of the full design, you must use the "within_full" argument, else results may be inaccurate. Coefficient covariances computed by hccm() > > #Show the plot. > print(group_plot) > > #tweak the plot > # group_plot = group_plot + > # theme( > # panel.grid.major = element_blank() > # , panel.grid.minor = element_blank() > # ) > # print(group_plot) > > > > #use the "print_code" argument to print the > # code for creating the plot and return the > # data to plot. This is useful when you want > # to learn how to create plots from scratch > # (which can in turn be useful when you can't > # get a combination of ezPlot and tweaking to > # achieve what you want) > group_plot_data = ezPlot( + data = ANT[ANT$error==0,] + , dv = .(rt) + , wid = .(subnum) + , between = .(group) + , x = .(group) + , do_lines = FALSE + , x_lab = 'Group' + , y_lab = 'RT (ms)' + , print_code = TRUE + ) Warning: Collapsing data to cell means. *IF* the requested effects are a subset of the full design, you must use the "within_full" argument, else results may be inaccurate. Coefficient covariances computed by hccm() ggplot( data = stats , mapping = aes( y = Mean , x = group ) )+ geom_point()+ geom_errorbar( mapping = aes( ymin = lo , ymax = hi ) , linetype = 1 , show.legend = FALSE , width = 0.25 , alpha = .5 )+ labs( x = 'Group' , y = 'RT (ms)' )> > > #Re-plot the main effect of group, using the levels > ##argument to re-arrange/rename levels of group > group_plot = ezPlot( + data = ANT[ANT$error==0,] + , dv = .(rt) + , wid = .(subnum) + , between = .(group) + , x = .(group) + , do_lines = FALSE + , x_lab = 'Group' + , y_lab = 'RT (ms)' + , levels = list( + group = list( + new_order = c('Treatment','Control') + , new_names = c('Treatment\nGroup','Control\nGroup') + ) + ) + ) Warning: Collapsing data to cell means. *IF* the requested effects are a subset of the full design, you must use the "within_full" argument, else results may be inaccurate. Coefficient covariances computed by hccm() > > #Show the plot. > print(group_plot) > > > #Plot the cue*flank interaction. > cue_by_flank_plot = ezPlot( + data = ANT[ANT$error==0,] + , dv = .(rt) + , wid = .(subnum) + , within = .(cue,flank) + , x = .(flank) + , split = .(cue) + , x_lab = 'Flanker' + , y_lab = 'RT (ms)' + , split_lab = 'Cue' + ) Warning: Collapsing data to cell means. *IF* the requested effects are a subset of the full design, you must use the "within_full" argument, else results may be inaccurate. > > #Show the plot. > print(cue_by_flank_plot) > > > #Plot the cue*flank interaction by collapsing the cue effect to > ##the difference between None and Double > cue_by_flank_plot2 = ezPlot( + data = ANT[ ANT$error==0 & (ANT$cue %in% c('None','Double')) ,] + , dv = .(rt) + , wid = .(subnum) + , within = .(flank) + , diff = .(cue) + , reverse_diff = TRUE + , x = .(flank) + , x_lab = 'Flanker' + , y_lab = 'RT Effect (None - Double, ms)' + ) Warning: Collapsing data to cell means. *IF* the requested effects are a subset of the full design, you must use the "within_full" argument, else results may be inaccurate. Warning: Collapsing "cue" to a difference score ("None"-"Double") prior to computing statistics. > > #Show the plot. > print(cue_by_flank_plot2) > > > > #Plot the group*cue*flank interaction. > group_by_cue_by_flank_plot = ezPlot( + data = ANT[ANT$error==0,] + , dv = .(rt) + , wid = .(subnum) + , within = .(cue,flank) + , between = .(group) + , x = .(flank) + , split = .(cue) + , col = .(group) + , x_lab = 'Flanker' + , y_lab = 'RT (ms)' + , split_lab = 'Cue' + ) Warning: Collapsing data to cell means. *IF* the requested effects are a subset of the full design, you must use the "within_full" argument, else results may be inaccurate. Warning: Mixed within-and-between-Ss effect requested; FLSD is only appropriate for within-Ss comparisons (see warning in ?ezStats or ?ezPlot). Error: ! The `facets` argument of `facet_grid()` was deprecated in ggplot2 2.2.0 and is now defunct. ℹ Please use the `rows` argument instead. Backtrace: ▆ 1. └─ez::ezPlot(...) 2. ├─base::eval(parse(text = p)) 3. │ └─base::eval(parse(text = p)) 4. └─ggplot2::facet_grid(facets = . ~ group, scales = "free_y") 5. └─lifecycle::deprecate_stop("2.2.0", "facet_grid(facets)", "facet_grid(rows)") 6. └─lifecycle:::deprecate_stop0(msg) 7. └─rlang::cnd_signal(...) Execution halted
checking PDF version of manual ... [2s/2s] OK
DONE Status: 1 ERROR, 1 NOTE
using check arguments '--no-clean-on-error '