- using R Under development (unstable) (2026-02-12 r89409)
- using platform: aarch64-apple-darwin23
- R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
- running under: macOS Sequoia 15.7.1
- using session charset: UTF-8
* current time: 2026-02-13 02:06:35 UTC
- checking for file ‘epiparameter/DESCRIPTION’ ... OK
- this is package ‘epiparameter’ version ‘0.4.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘epiparameter’ can be installed ... [4s/4s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the package can be unloaded cleanly ... [1s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking whether startup messages can be suppressed ... [1s/1s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [4s/4s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [3s/3s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [42s/43s] ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [42s/43s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> # nolint start
> library(testthat)
> library(epiparameter)
> # nolint end
>
> test_check("epiparameter")
Citation cannot be created as author, year, journal or title is missing
Saving _problems/test-extract_param-266.R
Returning 4 results that match the criteria (4 are parameterised).
Use subset to filter by entry variables or single_epiparameter to return a single entry.
To retrieve the citation for each use the 'get_citation' function
Returning 3 results that match the criteria (3 are parameterised).
Use subset to filter by entry variables or single_epiparameter to return a single entry.
To retrieve the citation for each use the 'get_citation' function
[ FAIL 1 | WARN 2 | SKIP 30 | PASS 523 ]
══ Skipped tests (30) ══════════════════════════════════════════════════════════
• On CRAN (23): 'test-convert_params.R:13:1', 'test-convert_params.R:53:1',
'test-convert_params.R:114:1', 'test-convert_params.R:144:1',
'test-epiparameter.R:176:1', 'test-epiparameter.R:197:1',
'test-epiparameter.R:219:1', 'test-extract_param.R:294:3',
'test-extract_param.R:363:3', 'test-parameter_tbl.R:4:1',
'test-parameter_tbl.R:16:1', 'test-parameter_tbl.R:31:1',
'test-parameter_tbl.R:46:1', 'test-parameter_tbl.R:61:1',
'test-parameter_tbl.R:76:1', 'test-parameter_tbl.R:92:1',
'test-parameter_tbl.R:105:1', 'test-parameter_tbl.R:118:1',
'test-plot.R:1:1', 'test-print.R:4:1', 'test-print.R:9:1',
'test-print.R:16:1', 'test-print.R:27:1'
• {epireview} is not installed (7): 'test-coercion.R:13:3',
'test-coercion.R:39:3', 'test-coercion.R:63:3', 'test-coercion.R:88:3',
'test-coercion.R:114:3', 'test-coercion.R:140:3', 'test-coercion.R:169:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-extract_param.R:256:3'): .extract_param works for lnorm percentiles ──
Expected `lnorm_params` to equal `list(...)`.
Differences:
`actual$convergence`: 52.0
`expected$convergence`: 0.0
`actual$message`: "ERROR: ABNORMAL_TERMINATION_IN_LNSRCH"
`expected$message`: "CONVERGENCE: NORM OF PROJECTED GRADIENT <= PGTOL"
[ FAIL 1 | WARN 2 | SKIP 30 | PASS 523 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [13s/13s] OK
- checking PDF version of manual ... [3s/3s] OK
- DONE
Status: 1 ERROR
- using check arguments '--no-clean-on-error '